Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4521 ATGATCAGAAAACCTTCTAAACCTTTAAACTCCATCCTCCCCCCATTCTCCAGATCCATCCTCATCATCCTCTCCATGGCTTCCCTTCCCTTCCTCTTCTTCCTCCTCTTCCTCTCCCCACCACAACAACCACCACAACCACCACCCTCCCCTGAAATCCAACAAGCCTGCAAGGCCACCCGCTTCCCTCACCAATGCCGCTCCTCTCTTTCCGAACCCAACCTCCTCCCTCCTAACCCAACCCCTCTCCAGATCATCCAATCCGCCGTCGCAATCTCCTCGCAAAACCTCCACACCGCGAGAACAATGCTGAAAACCATCGCGGACTCCTCCGCTGGAAACCCCGCCCGCACCACCGCCGCTCACACCTGCCTCCACGTCCTACACTACTCCCATCACCGCACCTCCCTCGCCGCCGACGCTCTCCCGCGCGGCCGGACAAAGGACGCGCGCGCCTGGATGAGCGCTGCTCTGGCTTACCAGTACAACTGCTGGTCCGGGCTCAAGTACGTCAACGACACCGCGGTTGTCTCCGAAACTATGGCGTTTCTGGATTCCCTCACCGGGCTCTCCAGCAACGCGCTCAGCATGATGCTCTCCTATGACATATTCGGGAATGACACGGCTTCCTGGAGCCCGCCGCGAACAGAGCGCGACGGGCTCTGGGAGGGGGTAGGGTCGGGCGGGGCAGGGTCTCTGCCGCCCGGTGTGCCAGAGGGACTGACGCCGGATGTTACCGTGTGCAAGGGCGGGGGCCAGGGGTGTTATGCGACGGTGCAGGAGGCGGTTAATGTGGCGCCGGATGACGGGGAAGGGAGGTTTGTGATTCACATTAAGGAAGGGGTTTATGAGGAGAGGGTTAGGGTTCCGTTGAAGAAGAGGAATGTGGTGTTCTTGGGTGATGGCATGGGTAAGACTGTGATCACGGGCTCTGCAAATGTGGGGCAGACGGGAATGACAACCTATGAATCAGCCACAGTTGGGGTTCTTGGGGATGGATTCATGGCTAAGGATCTGACCTTCCAAAACACAGCAGGTCCGAATGCTCACCAAGCAGTAGCATTCAGATCAGACAGTGATCTTTCTGTCATTGAAAACTGTGAATTCATAGGCAATCAAGATACTCTTTATGCTCATTCCCTGCGCCAGTTTTATAAATCTTGCCGAATCCTGGGCAATGTGGACTTCATCTTTGGAAACTCAGCGTCAATCTTCCAGGACTGCAAAATCCTGGTCCGTCCTAGGCAGGCCAGGCCAGAGAAGGGCGAGAACAATGCCATTACTGCACAAGGCAGGACAGACCCTGCTCAGTCGACCGGCTTTGTTTTCCATAACTGCTTGATTAATGGTACAGAGGAATATATGGCATTGTATTATAGCAAACCTAAAAAACACAAGAACTATCTGGGTAGGCCATGGAAGGAGTATTCTAGAACAGTTTTCATTCATTCATTCTTGGAAGACCTTATCACACCACAAGGTTGGATGCCATGGACAGGGGATTTTGCGCTGAACACACTTTACTATGGGGAATTCGAGAACTCGGGACCTGGTTCTAATTTGACTCAGAGGGTGCCCTGGAGTAGTCAGGTCCCGGCTGAGCATGTGTCTACATATTCAGTGCAGAGTTTCATTCAAGGAAATGATTGGATTCACCATCTCAGTAATTAG 1671 0.5368 MIRKPSKPLNSILPPFSRSILIILSMASLPFLFFLLFLSPPQQPPQPPPSPEIQQACKATRFPHQCRSSLSEPNLLPPNPTPLQIIQSAVAISSQNLHTARTMLKTIADSSAGNPARTTAAHTCLHVLHYSHHRTSLAADALPRGRTKDARAWMSAALAYQYNCWSGLKYVNDTAVVSETMAFLDSLTGLSSNALSMMLSYDIFGNDTASWSPPRTERDGLWEGVGSGGAGSLPPGVPEGLTPDVTVCKGGGQGCYATVQEAVNVAPDDGEGRFVIHIKEGVYEERVRVPLKKRNVVFLGDGMGKTVITGSANVGQTGMTTYESATVGVLGDGFMAKDLTFQNTAGPNAHQAVAFRSDSDLSVIENCEFIGNQDTLYAHSLRQFYKSCRILGNVDFIFGNSASIFQDCKILVRPRQARPEKGENNAITAQGRTDPAQSTGFVFHNCLINGTEEYMALYYSKPKKHKNYLGRPWKEYSRTVFIHSFLEDLITPQGWMPWTGDFALNTLYYGEFENSGPGSNLTQRVPWSSQVPAEHVSTYSVQSFIQGNDWIHHLSN* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4521 556 SUPERFAMILY Pectin lyase-like 243 553 IPR011050 -
Lja1g4521 556 CDD PMEI-like_3 56 198 - -
Lja1g4521 556 SMART PMEI_2 48 197 IPR006501 GO:0004857
Lja1g4521 556 PANTHER PECTINESTERASE 19 553 - -
Lja1g4521 556 TIGRFAM PME_inhib: pectinesterase inhibitor domain 28 197 IPR006501 GO:0004857
Lja1g4521 556 Gene3D Invertase/pectin methylesterase inhibitor family protein 50 200 IPR035513 -
Lja1g4521 556 Pfam Plant invertase/pectin methylesterase inhibitor 53 197 IPR006501 GO:0004857
Lja1g4521 556 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 19 553 - -
Lja1g4521 556 Pfam Pectinesterase 244 548 IPR000070 GO:0030599|GO:0042545
Lja1g4521 556 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 51 197 IPR035513 -
Lja1g4521 556 Gene3D - 239 555 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4521 Lja-Chr1 58946492 58948727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4521 45 550 Carbohydrate Esterase AT5G09760 67.123 0.0 718
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4521 - - gmx:100802102 815.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4521 1 58946492 58948727 Lja1g4521 1 58946492 58948727 ECH
Lja4g0611 4 5056418 5059424 Lja1g4521 1 58946492 58948727 PCT