Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4519 ATGAGTGAAGGTGGCAGAAAGCGCTCTTCCAAGTGGGATTTGATAGATGAGCCTGAATTTGCACCTGGTAGTAAGCAAATGCGCTCTGGGAGGTCCTCTGCAGATGTTGCCGGCAGCAATAGCTCGAAATGGTCTTATTCAGAAGGAAATGATGAATTAAAACCTGGTAAGGGACGTTCATCTAAAGATTCTTTTTCTGGAGGCAGAGATTCAAATAAAGATAATATTATGAATAAAGACTATAGAGTTTCGGATGCAACAATGGACTTGGATACTGATAGAAGTTACAGCAAGAACATGTCTCCTTTGTTGGAGGAAAGGAAACAAAAGAGACGCAGTCAATCACCCAAAATTGGTTGGGGCAGTTCGCTCAGGAGAAGTCGGAGCAGGAGCCCTCCTCATGGTTTTAGGCGGGATTCAGGAATCAATGACAGAATTAGAACTAGGGTTGGAGGATCTTCACAACCATGCAGAGATTTTGCTTCTGGCACATGTAGAAGAGGTAGCCTTTGCAATTTTCTCCATCATGATAATCAAAATCCTGAAAACAGTTGGGAAAGTAAGCACAGAGAAGATGGAGCTCCTAGATATTCTGATACCCACGAGAGTAGGGACCATTCTTTTAGGAGTGGTAGAGCTAATGAAGCTTGTATTAATTTTGCGAAAGGCAGGTGTAGACAGGGATCATCATGCAAGTTTGTGCATCATAACAATTCTGATGGGTACGGTAAAGTTTCTGGGGATGAATTAACTAGAGAAAAGGAAATTGATAGAAGGCGCAGAGATAGTTCTTTTGAGCAGGGTGGCAGGCATGGGTACGGTAAAGTTTCTGTGGATGAATTAACTAGAGAAAAGGAAATTGATAAAAGGCGCGGAGATAGTTCTTTTGAGCAGGGTGGCAGGCATGGGCCAAACCGCAGTAGTGATATTCCTTGCAAATTTTTTGCTAATGGAAATTGTCGTAATGGTAAATACTGTAGGTTTTCTCATGATAGGCAAGCATGTAGGAGCCCTGATAGAAGATCAAGGGATGATAGATGGGCAAGCAATCCAAGTGGAGATCATCAGATGTTTGATAGACCAAAAATGAGTGATACCGCTAGTCCTAATAGAAGGCTAAGAGATGATAGGTGGGGCTCAGATGGAAATACGGCTGATGCAGATAAAGTTAGGGACAGTCTAAAGCGTAATGACGCAGTTGCTACCTCTGACAGAGCAAAGCTGATTGAACACAAAACTGGAAATGTAGGTGTCACAGATCCAAAATTTACTGATTGGCCCACGGGGGATGCATGGGGTCATAGTTTAGATAAGAGCAGAGTGCTTGGGGAACCACCATTTTTAGATGATAAGAAGGAAGCTGACCATTGGGTTGCAGAAAATACTGGTGCCAACATGCATAGTTCCCAGTCAATAGGCACAGACATTTGGTCAGATGAAGGAAAAATGTCGCCAGATTGGAATTATAGGTTGGGACCTTCCAGCCATATTGAAGAGTATGGACAGAATAGGCATGGGATAACACAGGGCGGTACTTATTTAGCCACCTCTGAACATGACAGAGTACAAGTTGCTCCAGGACACGGCCTTTACCAGAATGCACAGAGTGTTGATGGCCTATCACAAGTTATTTCGAGAAGTCCTCCTACTCAGGATAAGCATGGGATAATGCAGGGCGGTGCGTGTGTAGCCACCTCTGAACACGACAGAGTACAAGTTACTCCAGGACAAGGCTTTAATCAGAATGTACACAGTGTTAATTCTCTGCATTCTTCAAGCGGCCATGCGGTTGGACAAAGTCAAGTGACTGTTCCCATTCTTCCTTCAAGAGGAGTTGATGGTACGCACAACCGAGAAGTCTCCACCGAGATCATGGATGCAAGCTTATCACAAGTTATTTCAAGAAATCCCCCTACCCAGAATAAGCATGGGATAACGCAGGGCGGTGCGTATTTAGCCACTTCTGAATATGACAGAGTAGAAGTTGCTCCAGGACAAGGCTTTAATCAGAATGCACAGAGTGTTAATCCTCTACATTCTTCAAGCGGCCATGCAGATGGACAAAGTCAAGTGGCAGTTCCCATTCTTCCTTCAATAGGAGTTGTTGGTGGAACGCACAACCAAGAAATTTCTACTGAGAAAAACTGCACTGTTGAATCCAGTACCATGAATGCAAGCTTATCACAAGTTATTTCAAGAAATCCTCCTACTCAGAATAAGAATGGGATAACGCAGGGTGGTACATATTTTGCCACCTCTGAACATGATAGAGTACAAGTTGCTCCAGGACAAGGCTTTAATCAGAATTCTTTGCATTCTTCAAGTGGCTATACAATTGGACAAAGTCAAGTGGCAGTTCCCATTCTTCCTTCAAGAGGAGGAATTTTAGATGGTACACACAATCATGAAGTCTCTACTGAGAAAAAGTACCTTGCTGAACCCAGTATCATGGATGGAGGCTTATCACAAGTTATTTCAACTCCTACTCAGAATATGGTTAGCAAAGAACAAATTGCCCAGCTTACCAATCTCTCAGCCTCTCTGGCTCATATTCTTGGAACTGGTCAGCAGTTGCCCCAGCTTTATGCTGCTTTGAATTCTCATGATCTAAAGGACACTCCATCCCTAGCAAAAACTGAAGTTCCTTCCATGCCTGTTTCCAATACATCCATCAATCCAGATCCTGCTGTTGGACTTCCCCAGCAGTATGATCCAACTAGTGATAGTATTGAGCCAAATGCTGATGCAAAGAAGGTTTCTGCAGCCATTCCTGCAACTAAAAGAATTGCAGAACCTGCAGCAGAAATTCCATCACAGTTGCCTGACTCCGGAAGACAAAGTCGCGGTGATTCTATTAAGCCTGCTTCCTCAGAACTTGTCAAGAGTGATAAGATAATCCAGTTGCAGCCTGGTAAAAACTTTGATGTTAATAAAGATAAGAGCGGAGTTTTAGCTGCTGAGCGAAGACGAAATTCTCGAGATGCTCATAAGAATACCAAAGAGGATGGTCCTTTGGACAACATGGACCAACCTGGTGGACCTGATGAGGCCAAGAAAACAAAGGATGTGAAGGAGCTTCGTGCCTTTAAATTTTCATTGGCCGACTTGGTCAAGGAGCTTCTGAAGCCAGCATGGAAAGAAGGTCAAGTCAATAAAGAAGATTTTAAAACAATTGTGAAGAAAGTTGTTGAAAAAGTATCTGGTACTATGCAGGGGTCCCAAATTCCTCAGACAAAAGAGAAAATTGATCAATATTTGTCAGTTTCAAGAACAAAGCTTACCAAACTTGTACAGGCATATGTGGAAAAGGTTCAGAAGGCTTAG 3324 0.4308 MSEGGRKRSSKWDLIDEPEFAPGSKQMRSGRSSADVAGSNSSKWSYSEGNDELKPGKGRSSKDSFSGGRDSNKDNIMNKDYRVSDATMDLDTDRSYSKNMSPLLEERKQKRRSQSPKIGWGSSLRRSRSRSPPHGFRRDSGINDRIRTRVGGSSQPCRDFASGTCRRGSLCNFLHHDNQNPENSWESKHREDGAPRYSDTHESRDHSFRSGRANEACINFAKGRCRQGSSCKFVHHNNSDGYGKVSGDELTREKEIDRRRRDSSFEQGGRHGYGKVSVDELTREKEIDKRRGDSSFEQGGRHGPNRSSDIPCKFFANGNCRNGKYCRFSHDRQACRSPDRRSRDDRWASNPSGDHQMFDRPKMSDTASPNRRLRDDRWGSDGNTADADKVRDSLKRNDAVATSDRAKLIEHKTGNVGVTDPKFTDWPTGDAWGHSLDKSRVLGEPPFLDDKKEADHWVAENTGANMHSSQSIGTDIWSDEGKMSPDWNYRLGPSSHIEEYGQNRHGITQGGTYLATSEHDRVQVAPGHGLYQNAQSVDGLSQVISRSPPTQDKHGIMQGGACVATSEHDRVQVTPGQGFNQNVHSVNSLHSSSGHAVGQSQVTVPILPSRGVDGTHNREVSTEIMDASLSQVISRNPPTQNKHGITQGGAYLATSEYDRVEVAPGQGFNQNAQSVNPLHSSSGHADGQSQVAVPILPSIGVVGGTHNQEISTEKNCTVESSTMNASLSQVISRNPPTQNKNGITQGGTYFATSEHDRVQVAPGQGFNQNSLHSSSGYTIGQSQVAVPILPSRGGILDGTHNHEVSTEKKYLAEPSIMDGGLSQVISTPTQNMVSKEQIAQLTNLSASLAHILGTGQQLPQLYAALNSHDLKDTPSLAKTEVPSMPVSNTSINPDPAVGLPQQYDPTSDSIEPNADAKKVSAAIPATKRIAEPAAEIPSQLPDSGRQSRGDSIKPASSELVKSDKIIQLQPGKNFDVNKDKSGVLAAERRRNSRDAHKNTKEDGPLDNMDQPGGPDEAKKTKDVKELRAFKFSLADLVKELLKPAWKEGQVNKEDFKTIVKKVVEKVSGTMQGSQIPQTKEKIDQYLSVSRTKLTKLVQAYVEKVQKA* 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4519 1107 SUPERFAMILY CCCH zinc finger 309 331 IPR036855 GO:0046872
Lja1g4519 1107 MobiDBLite consensus disorder prediction 181 209 - -
Lja1g4519 1107 MobiDBLite consensus disorder prediction 667 687 - -
Lja1g4519 1107 MobiDBLite consensus disorder prediction 331 392 - -
Lja1g4519 1107 MobiDBLite consensus disorder prediction 1 156 - -
Lja1g4519 1107 Gene3D - 151 247 - -
Lja1g4519 1107 SMART c3hfinal6 306 332 IPR000571 GO:0046872
Lja1g4519 1107 SMART c3hfinal6 153 177 IPR000571 GO:0046872
Lja1g4519 1107 SMART c3hfinal6 212 237 IPR000571 GO:0046872
Lja1g4519 1107 MobiDBLite consensus disorder prediction 874 1020 - -
Lja1g4519 1107 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 719 1105 - -
Lja1g4519 1107 ProSiteProfiles Zinc finger C3H1-type profile. 151 178 IPR000571 GO:0046872
Lja1g4519 1107 Pfam CCCH-type zinc finger 311 331 IPR041367 -
Lja1g4519 1107 MobiDBLite consensus disorder prediction 276 297 - -
Lja1g4519 1107 MobiDBLite consensus disorder prediction 246 268 - -
Lja1g4519 1107 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 271 641 - -
Lja1g4519 1107 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 719 1105 - -
Lja1g4519 1107 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 271 - -
Lja1g4519 1107 MobiDBLite consensus disorder prediction 50 92 - -
Lja1g4519 1107 MobiDBLite consensus disorder prediction 26 48 - -
Lja1g4519 1107 ProSiteProfiles Zinc finger C3H1-type profile. 211 238 IPR000571 GO:0046872
Lja1g4519 1107 MobiDBLite consensus disorder prediction 1 15 - -
Lja1g4519 1107 MobiDBLite consensus disorder prediction 358 392 - -
Lja1g4519 1107 Pfam RNA-binding, Nab2-type zinc finger 216 235 - -
Lja1g4519 1107 MobiDBLite consensus disorder prediction 981 1004 - -
Lja1g4519 1107 MobiDBLite consensus disorder prediction 331 350 - -
Lja1g4519 1107 MobiDBLite consensus disorder prediction 880 909 - -
Lja1g4519 1107 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 646 740 - -
Lja1g4519 1107 MobiDBLite consensus disorder prediction 242 312 - -
Lja1g4519 1107 MobiDBLite consensus disorder prediction 115 129 - -
Lja1g4519 1107 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 646 740 - -
Lja1g4519 1107 MobiDBLite consensus disorder prediction 178 209 - -
Lja1g4519 1107 ProSiteProfiles Zinc finger C3H1-type profile. 306 333 IPR000571 GO:0046872
Lja1g4519 1107 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 271 641 - -
Lja1g4519 1107 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 1 271 - -
Lja1g4519 1107 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 155 176 IPR000571 GO:0046872
Lja1g4519 1107 Gene3D - 302 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4519 Lja-Chr1 58905272 58911948 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja1g4519 zf-CCCH 4.4e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4519 - K22909 gmx:100783856 718.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4519 1 58905272 58911948 Lja1g4519 1 58905272 58911948 ECH
Lja1g4519 1 58905272 58911948 Lja4g0609 4 5038379 5043998 ECH