Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4518 ATGGACACCAACCAGAATGCTACTACCACATTCACAAATGTTACAAATAACACTTGGAATCTTGAGAGGATGAAAACAAGTGGGGGTGAGAACAACATGACTATCTTCCATAATGACCATCAAATTCCAATAGGCCTTGGAATCTGGCCTAACAATTACCACACACCATCCTCACCCTCACCCTCACCCTCAGCCACCACAATGCTCTCTTCAAGCTTCCTCAGTGATATGCTTGGAATCAACATCGAAGAAGACGAAGGCGAAGAAGAGGATAAAGAAGAAGATGAAGAGCTAGGAGCGATGAAGGAGATGATGTACAAGATTGCGGTGATGCAGCCGGTGGACATCGACCCGGCCGCCATCAGAAAACCAAAGAGGAAGAACGTGCGCATAAGTGATGACCCGCAGAGCGTGGCTGCACGGCACAGGCGAGAGAGGATAAGTGAGAAGATCCGCATCTTGCAAAGACTCGTCCCTGGTGGAACCAAAATGGACACTGCTTCCATGCTGGATGAAGCCATTCACTATGTCAAGTTCTTGAAGAGGCAAATCAGGTTGCTCCAATCAACCCCAAATTCTCAACATCATCAACAACACCCTCCTCCAACACCAACAAGTTGCAATGTTCCTGGTTTTACTAGTGAATTGTTTTTGGCCACCACCGGTAGTTATTGGCCTTTTGCACCAACTATAGTACTGCAAGGTTCCACTACCACCACCACCTCCGCCCTAGGACATGGCTATGCTGGTGATGATGGCTTTAAGCATCATGAGGTAGTTAGTGAATGA 789 0.4728 MDTNQNATTTFTNVTNNTWNLERMKTSGGENNMTIFHNDHQIPIGLGIWPNNYHTPSSPSPSPSATTMLSSSFLSDMLGINIEEDEGEEEDKEEDEELGAMKEMMYKIAVMQPVDIDPAAIRKPKRKNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIHYVKFLKRQIRLLQSTPNSQHHQQHPPPTPTSCNVPGFTSELFLATTGSYWPFAPTIVLQGSTTTTTSALGHGYAGDDGFKHHEVVSE* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4518 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983
Lja1g4518 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 140 205 IPR036638 GO:0046983
Lja1g4518 262 Pfam Helix-loop-helix DNA-binding domain 141 180 IPR011598 GO:0046983
Lja1g4518 262 MobiDBLite consensus disorder prediction 190 210 - -
Lja1g4518 262 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 68 234 - -
Lja1g4518 262 Gene3D - 134 200 IPR036638 GO:0046983
Lja1g4518 262 CDD bHLH_AtIND_like 132 189 - -
Lja1g4518 262 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 68 234 IPR045843 GO:0003700|GO:0006355
Lja1g4518 262 SMART finulus 137 186 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4518 Lja-Chr1 58888308 58889096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4518 100 194 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 78.947 6.02e-47 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja1g4518 HLH 1.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4518 - - lja:Lj6g3v1329780.1 317.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4518 1 58888308 58889096 Lja1g4518 1 58888308 58889096 ECH
Lja4g0608 4 5018701 5019510 Lja1g4518 1 58888308 58889096 PCT