Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4510 ATGGCCGATACAAAATTGATTCCAGGGTTTCGTTTTCATCCCACTGATGTTGAGCTGATTATGTACTTTCTGAAGAGGAAGATCCTCGGTCGAAAGTTCCCTTTTGATGTCATTGCTGAACTTGACATTTACAAGTATGCTCCGTGGGATCTTCCAGATAAGTCTGTGCTCAAAACTGGGGATTTGAAATGGTACTTCTTTTGTCCTCGTGGAATGAAATATTCCACTGGAGGGAAGCTGAACAGGGCTACGGAATTTGGGTACTGGAAGACTACTGGGAAGGACAGATCAGTTGAGCACAAAAATCAGGTTGTGGGGATGATAAGAACCCTGGTATTTCACATCGGCAGAGCCCCTAAGGGAGACCGAACTGATTGGGTTATGCACGAGTTCAGAATTGAACACAAGGACCTGGCTGACAAAGGCATTCCGCAGGATTCCTATGTAATTTGTAGGGTATTCCAAAAGGAGGGCCCTGGACCCAGGAATGGTGCACAGTATGGAAAACCATTTAATGAGGAAGATTGGGATGAAGATGAGGAAATTGACAGTAAACAATCTATGCCTGTTGCTACTACATCTGCTCCAGGTCCTGTTCTACCCACTGCAAGTCTTGTTGCGGTTACAAATGACATGCATACCTCTCCAAGTGTATGCATGGGACTGACCTCTGAATTATGTCTATCAGGATCGGTGCCCTCTTGCTCCACACATCCTTCAGCTCCAAACAATCAAGTTGACGAGTTCAAAGAATATGATAACACATTATCCGTGAATGATTACAATGGAAATGAGAAGGTTGATCATCCTGATCTGGCAAATAATGCTGAAGGTGGACCTTATCAAGATCCAAATGAGATTTTTGGTGAACTAGGGGACCTTGATAGCTTGCTTGGATTGGGTGAAGCAGACCTTAGAGGAGACCCTTTTTCCCGTGGCCAGGAGGATGAATGTACTACAAACGAAATGCTGTCTACGTCCTCGTGGTTTTGCGGTGATGGAGACTTCTTGGAATTGATTGATCTTGATTCTTGA 1035 0.4444 MADTKLIPGFRFHPTDVELIMYFLKRKILGRKFPFDVIAELDIYKYAPWDLPDKSVLKTGDLKWYFFCPRGMKYSTGGKLNRATEFGYWKTTGKDRSVEHKNQVVGMIRTLVFHIGRAPKGDRTDWVMHEFRIEHKDLADKGIPQDSYVICRVFQKEGPGPRNGAQYGKPFNEEDWDEDEEIDSKQSMPVATTSAPGPVLPTASLVAVTNDMHTSPSVCMGLTSELCLSGSVPSCSTHPSAPNNQVDEFKEYDNTLSVNDYNGNEKVDHPDLANNAEGGPYQDPNEIFGELGDLDSLLGLGEADLRGDPFSRGQEDECTTNEMLSTSSWFCGDGDFLELIDLDS* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4510 344 MobiDBLite consensus disorder prediction 161 196 - -
Lja1g4510 344 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Lja1g4510 344 Gene3D NAC domain 15 158 IPR036093 GO:0003677|GO:0006355
Lja1g4510 344 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 241 - -
Lja1g4510 344 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Lja1g4510 344 PANTHER PLANT NAC DOMAIN PROTEIN 1 241 - -
Lja1g4510 344 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4510 Lja-Chr1 58707805 58711296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4510 1 237 NAC Transcription Factor Family AT5G64060 56.540 1.14e-91 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja1g4510 NAM 3.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4510 - - lja:Lj1g3v1304790.2 583.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4510 1 58707805 58711296 Lja1g4510 1 58707805 58711296 ECH
Lja4g0601 4 4968877 4972616 Lja1g4510 1 58707805 58711296 PCT