Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4507 ATGCCCACGTGGTGGGGTAAAAAATCCAGCAAGTCCAAGGAGCAAGTGCCGGAGGACGAGCCACGTGCCGCCGGCGTGCTCCACTTCAACTTCATCAAGTCTCCGATCAGGAAGCAGCTCAAAGGGGAAAGACCAAAAAGCTTCGACGATGCCGCCGCCGCCGCCGCTAGGATCTCGCCGAGAGCTAGCAGGGATCTCTCTTCTTCCGCCGCCGCCTGCTGTAACTCCGACGTCGGCGAGAAGAGAGGGGTCCCCTTGCCTCGCCCTTCTGTTTCGTCTACCCAGAGCTTCGGCACCGATCAAGCCATCGTGTTCGGATCTGCATCGCTTTCTGGCTCTAGCGTGAGTTCATCTGGCTCGTGTGATGATCAACCTCCCTGTCACTCTCAGTCTCCGGTTAATCCCTCAAGAGCACAATATGAAATGAAGTTCAATGTGAGGTCTAAAAGCCCAGGTCCTGGGTCAAGAGGGCCAACTAGTCCTACATCACCTCTTCATCCAAGGTTGCAAGGGTTGAGTCTTGGCTCCCCAACAGGAAGACAAGAAGATGATAGGAGTCAGTGTCATCCATTGCCTCTTCCACCGGGCTCTCCGACTAGTCCTTCTTCTCTTTCCAACACTTTTTCGAACACGAGAGCAAATGGTCTGCCAGAAAACACTAGCTACTGTTCCAAGTGGAAGAGAGGAAAGCTTCTAGGAAGGGGAACATTTGGACATGTTTACCTGGGATTCAATAGTGAGAGTGGACAGTTGTGTGCAATAAAAGAAGTCCGTGTTGCCTGTGAAGATCAAACATCAAGAGAGTGCCTGAAACAACTTAATCAGGAGATACATTTGCTTAGTCAGCTTTCACATCCAAACATTGTTCAATACTATGGGAGTAATTTGGGAGAAGAAACACTTTCCGTTCATTTGGAATATGTCTCTGGTGGTTCTATTCATAAATTACTTCAGGAATATGGGGCCTTTAAGGAGCCTGTTATTCAAAATTATACCAGGCAGATTGTCTCTGGACTTGCATATCTTCATGGGAGAAATACAGTGCACAGGGATATCAAAGGGGCTAACATACTCGTTGATCCTAATGGTGAAATCAAGCTGGCAGACTTTGGAATGGCTAAACTTACAAGTACTACTGTCTCGATGCTTTCTTTCAAAGGAAGTCCATACTGGATGGCACCTGAGGTTGTAATGAATACAAATGGCTATAGTCTTCCTGTTGATATTTGGAGTTTGGGATGCACAATTATAGAAATGGCAACATCAAAACCTCCTTGGAGTCATTATGAAGGGGTGGCCGCAATATTTAAGATTGGTAACAGCAAAGATATGCCTGAAATTCCTGATCATCTCTCAAATGATGCAAAGAATTTTATTATGCTATGCTTACAAAGAGATCCATTAGCCCGCCCAAAAGCCCAAGCGTTACTAGATCACCCCTTTCTTCGAGATCAGTCTGCAACCAGAGCTACAAACGTCAGAATAACTAGGGATGCTTTTCCCTACATGTTTGATGGAAGCCGGACACCGCCAGTTTTAGAGCATTCCCAGAGAACAACTTCCCTGGATGCAGATTATGCAACAAAGCCAGCTGTTGCAGCTTCACGAGGATTAAGGAGTCCAAGAGATAACTCAAGAACGATCACATCTTTACCAGTGTCTCCCTGTTCAAGTCCATTGCGACAATACGGGCCGGCACACAAAAGCTGTTTCCTTTCTCCTCCTCATCCTAGTTACACAATGATGGGACAACATACCCTCCCTTCATCTCCAATGAGATCAAATGCCACGTTCAGTCTTGATCCTTGGCACGAAATACCTGCGTACAAACTCCACACACCCGGTGGATCCCCGCGAAGGAGACTCATTTGA 1872 0.4712 MPTWWGKKSSKSKEQVPEDEPRAAGVLHFNFIKSPIRKQLKGERPKSFDDAAAAAARISPRASRDLSSSAAACCNSDVGEKRGVPLPRPSVSSTQSFGTDQAIVFGSASLSGSSVSSSGSCDDQPPCHSQSPVNPSRAQYEMKFNVRSKSPGPGSRGPTSPTSPLHPRLQGLSLGSPTGRQEDDRSQCHPLPLPPGSPTSPSSLSNTFSNTRANGLPENTSYCSKWKRGKLLGRGTFGHVYLGFNSESGQLCAIKEVRVACEDQTSRECLKQLNQEIHLLSQLSHPNIVQYYGSNLGEETLSVHLEYVSGGSIHKLLQEYGAFKEPVIQNYTRQIVSGLAYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKLTSTTVSMLSFKGSPYWMAPEVVMNTNGYSLPVDIWSLGCTIIEMATSKPPWSHYEGVAAIFKIGNSKDMPEIPDHLSNDAKNFIMLCLQRDPLARPKAQALLDHPFLRDQSATRATNVRITRDAFPYMFDGSRTPPVLEHSQRTTSLDADYATKPAVAASRGLRSPRDNSRTITSLPVSPCSSPLRQYGPAHKSCFLSPPHPSYTMMGQHTLPSSPMRSNATFSLDPWHEIPAYKLHTPGGSPRRRLI* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4507 623 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 605 - -
Lja1g4507 623 MobiDBLite consensus disorder prediction 109 143 - -
Lja1g4507 623 PANTHER MAP KINASE KINASE KINASE 1 605 - -
Lja1g4507 623 Pfam Protein kinase domain 227 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4507 623 MobiDBLite consensus disorder prediction 1 22 - -
Lja1g4507 623 CDD STKc_MEKK1_plant 225 482 - -
Lja1g4507 623 Gene3D Transferase(Phosphotransferase) domain 1 224 502 - -
Lja1g4507 623 MobiDBLite consensus disorder prediction 77 97 - -
Lja1g4507 623 SMART serkin_6 226 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4507 623 MobiDBLite consensus disorder prediction 152 181 - -
Lja1g4507 623 SUPERFAMILY Protein kinase-like (PK-like) 224 559 IPR011009 -
Lja1g4507 623 ProSitePatterns Protein kinases ATP-binding region signature. 232 255 IPR017441 GO:0005524
Lja1g4507 623 ProSiteProfiles Protein kinase domain profile. 226 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4507 623 MobiDBLite consensus disorder prediction 109 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4507 Lja-Chr1 58633089 58638272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4507 1 542 MAP Kinase Kinase Kinase AT1G53570 57.658 0.0 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lja1g4507 Pkinase 7.4e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4507 K04421 - gmx:100813122 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4507 1 58633089 58638272 Lja1g4507 1 58633089 58638272 ECH
Lja4g0598 4 4942311 4946870 Lja1g4507 1 58633089 58638272 PCT
Lja4g0411 4 3320900 3327378 Lja1g4507 1 58633089 58638272 PCT