Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4501 ATGGTAAGGTCCAGAAGCAGCAGCAGTAACAATGAGAGGAAACAAAGTTGCTACAGAGATCACTGGAGACCCCTTGAAGATGAGAAACTAAGGCAACTTGTGAATCAACATGGTGCACAGAACTGGAATTTTATTTCTGAACATCTTGAAGGAAGATCAGCTAATTTTTTTATCATTTTTTTTTTTGTCTTTTCCTTTTCTATGTCAATTTGGAAAAGCTGCAGATTGAGGTGGTACAATCAACTAAACCCAAACATAATTAAATTGCCCTTCACTGATGAGGAGGAAGAAAAGCTGCTATCACTTCACAAGGTTAAGGGAAACCAATGGGCTTCCATAGCCAGATACTTCCCTGGAAGAACTGACAATGCACTCAAGAATTACTTCCATGTGTTAATGGCCAGAAGAAGGAAGAGAGAGAGAAGGACACTGTTTGGTGACAAATTTGGCCACAGTTCAAGGATCAATTCCAACTCACAGAACTTCAGAAACACTGAAATTTTTGGTGTGTCTTATTACTCACAGACACCAACAACTCCTTGGACTCTAACTATAGGTTCTACAACCATCACATCAAGCAAGGCTGACAAAGACTCAAGTGTTTCTTCATGTGTTGGAGAGAAAGTGAAACCATTTGATTTGGAAAAAATTTCAAATGCTAGTCCTGCATTTGTAGGTTCTTGGATTCTTGGCACATACAAAAGCTTCACTGCACCAAGCCTTCCTAGTATTGGCAAGGTTGATCCTCTTCCAAAATTCTCATACACTAATTATGGCAACAGAACTGAGGACTCCATCACATGCTGCAACTCTGGTAAGCATCATGAGCAAGAACAAACTGAACCTCTTAATCTTAATCTCAAGCAAAAGGGTGTTGTTTCCTTCATAGACTTTCTTGGAGTGGGAAGCTCTTCATCCCATGATGACAGCATTAGGGGACCATGA 945 0.4011 MVRSRSSSSNNERKQSCYRDHWRPLEDEKLRQLVNQHGAQNWNFISEHLEGRSANFFIIFFFVFSFSMSIWKSCRLRWYNQLNPNIIKLPFTDEEEEKLLSLHKVKGNQWASIARYFPGRTDNALKNYFHVLMARRRKRERRTLFGDKFGHSSRINSNSQNFRNTEIFGVSYYSQTPTTPWTLTIGSTTITSSKADKDSSVSSCVGEKVKPFDLEKISNASPAFVGSWILGTYKSFTAPSLPSIGKVDPLPKFSYTNYGNRTEDSITCCNSGKHHEQEQTEPLNLNLKQKGVVSFIDFLGVGSSSSHDDSIRGP* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4501 314 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Lja1g4501 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 137 IPR017930 -
Lja1g4501 314 SUPERFAMILY Homeodomain-like 17 129 IPR009057 -
Lja1g4501 314 SMART sant 18 84 IPR001005 -
Lja1g4501 314 SMART sant 87 135 IPR001005 -
Lja1g4501 314 Pfam Myb-like DNA-binding domain 89 132 IPR001005 -
Lja1g4501 314 Pfam Myb-like DNA-binding domain 19 55 IPR001005 -
Lja1g4501 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 55 IPR017930 -
Lja1g4501 314 ProSiteProfiles Myb-like domain profile. 14 82 IPR001005 -
Lja1g4501 314 Gene3D - 90 160 - -
Lja1g4501 314 PANTHER MYB TRANSCRIPTION FACTOR 72 303 - -
Lja1g4501 314 PANTHER MYB TRANSCRIPTION FACTOR 6 54 - -
Lja1g4501 314 PANTHER MYB PROTEIN-RELATED 72 303 - -
Lja1g4501 314 PANTHER MYB PROTEIN-RELATED 6 54 - -
Lja1g4501 314 CDD SANT 90 133 IPR001005 -
Lja1g4501 314 Gene3D - 19 87 - -
Lja1g4501 314 CDD SANT 22 80 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4501 Lja-Chr1 58612167 58613157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4501 1 138 MYB Transcription Factor Family AT4G33450 59.420 2.41e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja1g4501 Myb_DNA-binding 2.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4501 K09422 - pop:7466738 197.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4501 1 58612167 58613157 Lja1g4501 1 58612167 58613157 ECH