Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4498 ATGGATCCATGTAGTGATTATCCTCATGCTGGTCCTTTGGTTGAGTTTGATGCAGTAGTTCATCGTAGTCAAACTGAGGAGGATACATTATCATTGCCGAAAGAGTCATTGTGTTCTCAAACACAAGAGCAGGAGATTAGTAAAGGCATGTCTTTTGAATCATTAGATGCTGTGAAATCATTCTATCGTGATTATGGTGTTAGAAAGGGGTTTGGATTCATGGTAAGAAACTCCAGAAAAGGACCTGATGGTAAAATAAACTACATCATACTTGCATGTTCAAGAGAAGGTAGTTATGTCTCACCAATCCCCACCGAGTTGAAGACCAATTCAACAATAAAGAACAATTGTCCTGCTAAGATATCAGCAAAGTTGAGTAAAGATGATGGAAGATGGTACATATACACAGTTGATCTTGACCATTGTCATGAGCTTAGCCCTGGGAAAGCAAGATTGTTTCATGCAAGGAGAAACATAAGTCCACCTATGAAAAGAACACTTGAGACAACTGATGAAGCTGGTGTAAGGGTGAACAAGAGTTTTCGTTCTCTTGTTCAAGGTTCAGGAGGATATGAAAACTTGGCTTTTGGTGAACAAGATGTCCACGACTTTGTGGGACAACAAAGGCGTGCTCTTGGGAAGGAAGGAGATGGAAAGGCATTGATAGCTTATTTTGCTCAAATGCAGCAAAAGAATAGTGACTTCTATTATGAAATTGACTTGGATGACAACTTTCATGTCAAAAATATATTCTGGGCTGATGCAAGGAGCAGGGCAATGTGTGAGTACTTCGGAGATGTGGTCTCCTTTGACACAACATACCTGGTCAATAAATATGACATGCCTCTTGCCCTGTTTGTGGGTGTCAATCATCATGGCCAATCAATTCTGTTGGGGTGTGGATTGCTATCTGTCGAAGACACCGACTCGTTTGTATGGTTGTTTGAGACATGGATGCGTTGTATGTATGGAAAGGCTCCTCAAGGCATTGTCACAGATCAGTGTATGGCCATGGAAAATGCAATACATTTGGTCTTCCCAAATGCTCGGCATAGGTGGTGCTTATGGCATATAATGAAAAAAATTCCTGAGAAATTCAAAGGTTATGGTCAATACAAGGAAATGAAGAATGACATGGAAGTTGTTGTGTATGATTCATTGGATGAGATTGAATTTGATAGCACATGGAACACATTCATCGACAAATATGGGTTGAGGGATAATGAATGGCTAACGAACCTATACTTGGAGCGATCAAGATGGGTCCCATGTTTGGTAAGGAAGTATTTTTGGGCAGGAATATCAACCACGCAAAGAAGTGAAAGTATGAATGTTTTTTTTGATGGATATGTAAACTCCAAAACATCAATACAACAGTTTGTCTTGCAATACGGTAATGCCATTCGGGACATGGCTGAAAAGGAGTGTAAGGCTGATTTTCAGTCATTTAACACAAAAGTCCCTTGCGCAACAAATTCTGACATTGAGAGGCAATTCCAACAGCAATACACTCATAAAAAGTTTAATGAGGTTCAAGCTGAATTTCGAGGAAAAATGAACTGTTGTGTGATTGGCATGTGTGAGGATGGTTCAATATGCCGCTATGAAGTCATGGAAGAGATGTGTATTGCAGGGCATACAAAGGAAGTCAATTTCCACGTTATCTTCAATCGTGACACTCATGATCTTAGTTGCACTTGTTTATTGTTTGAATTTAAAGGGATAATGTGCAGACATTCATTTATTATATTTGCAAAGGAAAGGGTGAAACAAATTCCCTCCAAGTATATTTTAGATAGATGGAGTAAAAATTTACGAAGGAACCACACTAGTGTCAAGTGTAGTTATGACTTGAAACATATGCAGCCACAAGTGGAAAGGTTTGATCAATTGTGCAAGGTTTTCCACAAGGTTGCTGAGATTGCATCTGTGTCTCCTCAAGCCACTGAGTTGCTAGCTGAAATTGTGCATGGTGCTGAAGAGAAGGTGAAGACAGCAGCTACTTCTAGCCAAAATCCGGGTCCACATACTAATGATATGTAA 2043 0.397 MDPCSDYPHAGPLVEFDAVVHRSQTEEDTLSLPKESLCSQTQEQEISKGMSFESLDAVKSFYRDYGVRKGFGFMVRNSRKGPDGKINYIILACSREGSYVSPIPTELKTNSTIKNNCPAKISAKLSKDDGRWYIYTVDLDHCHELSPGKARLFHARRNISPPMKRTLETTDEAGVRVNKSFRSLVQGSGGYENLAFGEQDVHDFVGQQRRALGKEGDGKALIAYFAQMQQKNSDFYYEIDLDDNFHVKNIFWADARSRAMCEYFGDVVSFDTTYLVNKYDMPLALFVGVNHHGQSILLGCGLLSVEDTDSFVWLFETWMRCMYGKAPQGIVTDQCMAMENAIHLVFPNARHRWCLWHIMKKIPEKFKGYGQYKEMKNDMEVVVYDSLDEIEFDSTWNTFIDKYGLRDNEWLTNLYLERSRWVPCLVRKYFWAGISTTQRSESMNVFFDGYVNSKTSIQQFVLQYGNAIRDMAEKECKADFQSFNTKVPCATNSDIERQFQQQYTHKKFNEVQAEFRGKMNCCVIGMCEDGSICRYEVMEEMCIAGHTKEVNFHVIFNRDTHDLSCTCLLFEFKGIMCRHSFIIFAKERVKQIPSKYILDRWSKNLRRNHTSVKCSYDLKHMQPQVERFDQLCKVFHKVAEIASVSPQATELLAEIVHGAEEKVKTAATSSQNPGPHTNDM* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4498 680 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 41 665 IPR031052 GO:0006355
Lja1g4498 680 ProSiteProfiles Zinc finger SWIM-type profile. 552 588 IPR007527 GO:0008270
Lja1g4498 680 Pfam MULE transposase domain 267 361 IPR018289 -
Lja1g4498 680 PANTHER OS03G0843700 PROTEIN 41 665 - -
Lja1g4498 680 SMART 26again6 563 590 IPR006564 GO:0008270
Lja1g4498 680 Pfam FAR1 DNA-binding domain 60 146 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4498 Lja-Chr1 58600246 58602288 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja1g4498 MULE 1.5e-33 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4498 - - gmx:102667848 739.954