Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4495 ATGAACGAAGCTCAAGTCCAAATAACCATTCCTCACTTGTTCAGATGCCCAATCAGCCTAGACTTGTTCGAAGATCCAGTGACTTTATGCACAGGCCACACCTATGACAGATCAAGCATAGAGAAATGGCTCTCTGCAGGTAACCTCACATGCCCTGTAACAATGCAGAAGCTTCATGATCCTTCCATTGTTCCCAATCACACCCTACGCCATTTAATCGATCAGTGGCTTCAACTGGGTCTCCAATTTGACCCTGGTAACTCTGCTTCTATAGATTACTTAGCTTCACTCAAGCACAACCTTGAATCACCAGAAGCCACTTTACAAAGCAAGCTCCAAGCACTTGAGAAAATTAGAGTCCTCTCTGATGAGTATTGCTCCTTCAAAAAAACTTGCTTTCACCAACTGGGGTTCTTGCCTTTACTTCTAGAACTAGTTTTTGGAAAAGAAGATGCTACTTCTTCACCCTCAAAAAATCACATGGAATTTGCAGAGGTAGCACTATCTTGCATTGTAAAATTGTTGCCACTTGTTAGCTTAGAGCCTCTGAACATGATCAAAGATGAGTCCAAATTAGCAACGTTCCTGCAACTACTTGAAAAGGGAACTAGCTCAATCAAGACTAGTTTGTGTCAAGTTATAGAATCCACAGCGGCAATATCACAAACAGATGGGGTGCATCACATACTTGGAAACTCCCACAAACTAGTACAAGAGATTGTTCTACTAATTCGCCAAAACTGCGATGAGGTTTCGGTTTCGGTTTCGAATGCAGCAATCAGAGCTATGTCAGCGTTATGCTCCATGGTTTCTAACAGAGAAAATTTGGTGAAAGCAGGAGCAATAGAAGCAATCATAGCATACATTTCAGAACCAAGAGAGAAGAACTTGGCTCCACTTGCCATGGTGGCGATGAAGAAGCTTGTGGTGCTTGAGAGTGGCAAAGAAGCGTTGGTGAATCACCCCAGAGGGATTGAAACTCTGGTGAAGATGGTTTTCAGAGTGTGTAATCAAGAGTGCAGTGAGATTGCTGTTGGGGTGCTTTTGATTGTTTGTTGTGATTCTGGGCGTGCCAGAGAAGAAGCCATTGAAGGTGGGGTTTTGACTCAGTTGCTGTTTCTTCTGCAGAGTCAGTGCTGCATCAAAACCAAAGCCAAGGCCAGAATGCTGCTCAAGTTGCTTAGATCCAAGTGGATTGAAGAACCAAGAAAACAGGTGTAG 1221 0.4341 MNEAQVQITIPHLFRCPISLDLFEDPVTLCTGHTYDRSSIEKWLSAGNLTCPVTMQKLHDPSIVPNHTLRHLIDQWLQLGLQFDPGNSASIDYLASLKHNLESPEATLQSKLQALEKIRVLSDEYCSFKKTCFHQLGFLPLLLELVFGKEDATSSPSKNHMEFAEVALSCIVKLLPLVSLEPLNMIKDESKLATFLQLLEKGTSSIKTSLCQVIESTAAISQTDGVHHILGNSHKLVQEIVLLIRQNCDEVSVSVSNAAIRAMSALCSMVSNRENLVKAGAIEAIIAYISEPREKNLAPLAMVAMKKLVVLESGKEALVNHPRGIETLVKMVFRVCNQECSEIAVGVLLIVCCDSGRAREEAIEGGVLTQLLFLLQSQCCIKTKAKARMLLKLLRSKWIEEPRKQV* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4495 406 Gene3D - 189 405 IPR011989 -
Lja1g4495 406 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Lja1g4495 406 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Lja1g4495 406 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Lja1g4495 406 PANTHER WDSAM1 PROTEIN 9 397 IPR045185 GO:0061630
Lja1g4495 406 SUPERFAMILY RING/U-box 5 78 - -
Lja1g4495 406 CDD RING-Ubox_PUB 14 56 IPR045210 -
Lja1g4495 406 SUPERFAMILY ARM repeat 99 391 IPR016024 -
Lja1g4495 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 80 IPR013083 -
Lja1g4495 406 PANTHER OS02G0542800 PROTEIN 9 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4495 Lja-Chr1 58539284 58541447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4495 8 398 U-box Gene Family AT3G19380 31.188 1.06e-46 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4495 - - gmx:100815247 578.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4495 1 58539284 58541447 Lja1g4495 1 58539284 58541447 ECH