Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4492 ATGGCAGATGGAATTAGCATCAATCTTCCTCCTGGGTTTCTCTTCTCCCCAACAGATGAAGAACTTGTCCTTCATTTTCTCCATTGCAAGGCTTCTTTTCTACCCTGCCATCCAAACATCATCCCTGAACTTCATCACTCTCTGCTTGATCCTTGGGAATTAAATGGTAAGGCGTTCTCAAGTGGAAATCAATACTATTTCTTCAGCAAAGTAAATGGAAACAGATCCACAGAAATTGGGTATTGGAAGGAAATAGGTGTCACAGAACCTATTTTGTCAGCAGTTGATGAGAAAGTGGGAATTAAGAAGTACCTCGTGTTCTACATTGGCGAACCTCCACAAGGCACTGAAACCAGTTGGATGATGCAAGAATATCATATTTGCTCCTCTGGGTTGGACTCATCACCATATCCAAGTGCTTGGGGAAGAAGGAAACCTGTGAGTGAGTTTAGTAGTTTTTTTAAATTGATATATGACCCTTCTACTAATTTAAAAATTCTAGCATACACCAGTTTGATTGATGTTGTAATTATAAACCGTGTACCATTTTCTATGTATGCTAGACATATCCTTGTTAATAATCAATTATGGTGTGTGACAGGACATGAATTGGAGCAAGTGGGTTTTATGCAGAGTGTATGA 642 0.391 MADGISINLPPGFLFSPTDEELVLHFLHCKASFLPCHPNIIPELHHSLLDPWELNGKAFSSGNQYYFFSKVNGNRSTEIGYWKEIGVTEPILSAVDEKVGIKKYLVFYIGEPPQGTETSWMMQEYHICSSGLDSSPYPSAWGRRKPVSEFSSFFKLIYDPSTNLKILAYTSLIDVVIINRVPFSMYARHILVNNQLWCVTGHELEQVGFMQSV* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4492 213 Pfam No apical meristem (NAM) protein 10 127 IPR003441 GO:0003677|GO:0006355
Lja1g4492 213 Gene3D NAC domain 18 145 IPR036093 GO:0003677|GO:0006355
Lja1g4492 213 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 143 - -
Lja1g4492 213 SUPERFAMILY NAC domain 6 132 IPR036093 GO:0003677|GO:0006355
Lja1g4492 213 PANTHER NAC TRANSCRIPTION FACTOR 56 1 143 - -
Lja1g4492 213 ProSiteProfiles NAC domain profile. 9 149 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4492 Lja-Chr1 58479525 58481189 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4492 8 138 NAC Transcription Factor Family AT1G61110 44.604 5.36e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja1g4492 NAM 4.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4492 - - gmx:100170711 234.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4492 1 58479525 58481189 Lja1g4492 1 58479525 58481189 ECH