Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4487 ATGGAAGATGAGATTCATCATAGCAATTTGCCAAATGGGCTCATCACAGAAAATTACCCTGTCTCAAAGAACAATCACCACCACCAACACCACCACAATAGCAACAAAGAACAAGATCGCTTTCTCCCTATTGCCAATGTGGGCAGAATCATGAAGAAAGCAATCCCTTCCAATGGGAAAATCTCAAAGGATGCAAAAGAGACAGTGCAAGAATGTGTGTCAGAGTTCATAAGTTTTGTCACAGGGGAAGCCTCTGACAAATGCCAAAGAGAAAAAAGAAAAACCATCAATGGTGATGATGTCATATGGGCCATAACAACATTAGGATTTGAGAACTATGTGGATCCATTGAAATTCTATCTTGTGAAATATAGAGACATTGAAGGAGAGAAGCTTAATCTTCCAAAGCAACAACAACAACATCGTTCTTCACAACATCATCACACTCAAGATCATCAAAATAACCATCTACCTTTAAATAGTGTTGTATATTCCTCAACAAGTCTCATTTCTCAGCCTCCATTTGTAGCCACGGATCCGATGTTTTCTCTACCATTCTCATCAAATTCAATGCAGAAACAATTGCAGCAGCAACAGCAGCAAGACCAGATTGATTCAGTGGGGCAATGGTAA 633 0.3949 MEDEIHHSNLPNGLITENYPVSKNNHHHQHHHNSNKEQDRFLPIANVGRIMKKAIPSNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDVIWAITTLGFENYVDPLKFYLVKYRDIEGEKLNLPKQQQQHRSSQHHHTQDHQNNHLPLNSVVYSSTSLISQPPFVATDPMFSLPFSSNSMQKQLQQQQQQDQIDSVGQW* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4487 210 MobiDBLite consensus disorder prediction 189 210 - -
Lja1g4487 210 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 22 201 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lja1g4487 210 ProSitePatterns NF-YB/HAP3 subunit signature. 72 88 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lja1g4487 210 MobiDBLite consensus disorder prediction 134 155 - -
Lja1g4487 210 Gene3D Histone, subunit A 27 160 IPR009072 GO:0046982
Lja1g4487 210 MobiDBLite consensus disorder prediction 1 38 - -
Lja1g4487 210 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 41 105 IPR003958 -
Lja1g4487 210 SUPERFAMILY Histone-fold 38 156 IPR009072 GO:0046982
Lja1g4487 210 PRINTS CCAAT-binding transcription factor subunit A signature 107 125 - -
Lja1g4487 210 PRINTS CCAAT-binding transcription factor subunit A signature 69 87 - -
Lja1g4487 210 PRINTS CCAAT-binding transcription factor subunit A signature 88 106 - -
Lja1g4487 210 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-7 22 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4487 Lja-Chr1 58434249 58434881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4487 36 207 CCAAT-HAP3 Transcription Factor Family AT2G13570 64.706 3.33e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lja1g4487 CBFD_NFYB_HMF 1.9e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4487 K08065 - gmx:100778216 254.603