Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4483 ATGAGCAACAACGCCTCCAAGAAACGCCCTACGCCGGCGACGGCGCCACCGTCCCAACCCCCGCCTACAAGGCGGGCCTTCTCTCAGGAAGACGAGTTCGTCGACGAAGACGTGTTCCTGAACGAAACCCTATTTTCCGAAGACGAAGAGTCCCTCATCCTCCGTGACATCGAGCAGCGCCAGGCCCTCGCCGCTCGTCTCTCCAAATGGACCCGTCCTCCTCTCTCACCGGACTACATCTCGCAATCTCGTAGCGTCCTTTTCCAGCAATTGGAGATTGATTATGTGATTGGAGAGACTCATAGAGAATTGTTGCCGAACTCGTCTGGACCTGCTGCCATTATTAGAATATTTGGAGTTACAAAGGAAGGACACAGTGTTTGCTGTAATGTTCATGGGTTTGAGCCATATTTTTACATAAGCTGCCCTCCTGGAATGCGTCCAGATGATATCTCCCGTCTTCATCAAAATCTTGAGGCAAGGATGAGAGAAGCCAATAGAAATAATAATGTGGGAAAATTCGTTCGCCGTATCGAAATGGTCCAGAGAAGGAGTATTATGTACTATCAACAGTTGGATTGCCAACCCTTTCTCAAAATTGTTGTTGCACTCCCTACAATGGTGGCCAGCTGCCGTGGTATTCTTGATAGAGGTATTCAGCTTGATGGTCTGGGCATGAAAAGCTTCATGACTTATGAAAGCAATGTACTCTTTGCCCTTCGTTTCATGATTGATTGCAACGTAGTTGGTGGAAATTGGATTGAAATTCCTGCTGGAAAATATAAGAGGGCAAAGAAAGCCTTGTCTCACTGCCAATTAGAGTTTGATTGCTTGTTTTCCGAATTGATCAGTCATGCTCCAGAAGGTGAATATTCAAAGATGGCTCCATTTCGTATTTTGAGTTTTGATATTGAGTGTGCTGGTCGTAAAGGTCATTTTCCCGAGCCTATCCATGATCCTGTTATCCAGATAGCTAATCTGGTTACTTTACAAGGAGAAGACCAACCTTTTATTCGTAATGTTATGACCCTTAAGTCATGTTCTCCTATTGTCGGTGTTGATGTGATGTCATTTGATACTGAAAGTGAAGTCCTGTTAGCTTGGAGGGATTTTATCCGTGAAGTGGATCCTGATATTATTATTGGATATAACATATGCAAATTTGACTTGCCATATCTTATTGAGAGAGCTGCCACCTTGAAAATAGCAGAATTCCCAATTTTGGGCCGTATCAGGAACAGTAGAGTTCGAGTAAAAGATACAACTTTCTCATCAAGGCAGTTAGGGACCAGGGAAAGTAAAGAAGTAACAGTTGAAGGGAGAGTGCAGTTTGATTTGCTCCAGGTTATGCAAAGAGACTATAAATTAAGTTCTTATTCATTGAATTCTGTCTCGGCTCACTTCCTTTCTGAGCAGAAAGAAGATGTTCATCATTCAATTATATCTGATCTTCAAAATGGAAATGCAGAAACTAGGAGGCGCCTCGCTGTGTATTGTTTGAAGGATGCATATCTACCCCAGAGACTTTTGGATAAGTTGATGTTCATTTACAATTATGTTGAGATGGCTCGAGTTACTGGTGTACCAATTTCTTTTCTACTTTCTAGGGGCCAAAGTATTAAGGTACTTTCTCAACTTCTTAGGAAGGCAAAACAGAGAAATATGGTGATTCCTAACGTCAAACAGGCAGGGTCAGGGTCAGAACAAGGAACATTTGAAGGTGCCACTGTATTGGAGCCACAGGCTGGATTTTATGAAAAGCCAATTGCTACTTTAGATTTTGCATCCTTGTATCCGTCCATTATGATGGCCTACAACTTATGTTATTGCACTCTGGTGACCCCGGAAGATGCTCGAAAGCTCAACATTCCTCCTGAGTCAGTGAACAAAACTCCATCTGGTGAAACATTTGTTAAGTCAAATTTACAAAAGGGCATACTTCCTGAAATACTCGAAGAGCTATTAGCAGCCCGTAAAAGGGCAAAAGCAGACTTAAAGGAGGCAAAGGATCCCCTTGAGAAGGCTGTGCTAGATGGTAGACAGCTAGCCCTGAAGATTAGTGCAAATTCTGTATATGGGTTTACAGGAGCTACTATTGGTCAGTTACCATGCTTAGAGATATCGTCAAGTGTAACTAGCTATGGTCGGCAAATGATCGAGCACACTAAAAAACTTGTGGAAGATAAATTTACAATGCTGAATGGTTATGGACACACTGCTGAGGTAATATATGGAGACACAGATTCAGTCATGGTACAGTTTGGTGTTTCTTCTGTAGAAGAGGCTATGAAATTGGGGAGAGAAGCTGCTGAATATATTAGTGGAACTTTCATACAACCCATCAAACTAGAATTTGAGAAGGTTTACTTTCCATATCTCCTGATTAGCAAGAAGAGATATGCTGGTTTGTTTTGGACAAAACCGGACAAATTTGACAAAATGGACGCTAAAGGTATTGAAACAGTTCGAAGAGACAATTGCTTATTGGTCAAGAACCTGGTTAACGATTGCCTTCACAAAATACTCATTGACAGGGATATTCCTGGGGCAGTCCAGTATGTCAAGAATGCGATTTCAGATCTTCTCATGAACCGTATGGATTTATCACTTCTGGTTATTACAAAGGGTTTGACAAAGACTGGTGATGATTATGAAGTGAAGGCAGCTCATGTTGAACTTGCTGAAAGGATGCGCAAGAGAGATGCCGCAACTGCTCCAAATGTTGGAGATAGGGTACCTTATGTTATTATTAAAGCTGCAAAAGGCGCTAAGAACTATGAGAAATCAGAAGATCCCATCTTTGTCCTAGAGAACAACATTCCAATAGATCCTCATTACTATCTTGAGAATCAAATTAGCAAGCCAATTCTGAGAATATTTGAGCCAATTCTGAAGAATGCTAGCAATGAACTTCTCCATGGAAGCCACACAAGATCTATTTCTATTTCTACTCCGACAAACGGTGGTATAATGAAATTTGCTAAGAAACAACTTACTTGCATTGGTTGCAAAGCTTTACTTAGCAATGGAAACCACACTCTCTGCTCACATTGCAAAGGAAGGGAACCTGAACTATACTGTAAAACAGTAGCTCAAGTGTCTGACCTAGAGATGCTTTTTGGGAGGTTGTGGACACAATGTCAGGAGTGCCAAGGTTCACTTCATCAAGATGTTCTATGCACAAGTCGGGATTGTCCCATTTTTTATCGACGTAAAAAAGCGCAGAAAGATATGGCTGAAGCAAGGTTGCAATTGGACAGATGGAACTTCTAG 3273 0.4186 MSNNASKKRPTPATAPPSQPPPTRRAFSQEDEFVDEDVFLNETLFSEDEESLILRDIEQRQALAARLSKWTRPPLSPDYISQSRSVLFQQLEIDYVIGETHRELLPNSSGPAAIIRIFGVTKEGHSVCCNVHGFEPYFYISCPPGMRPDDISRLHQNLEARMREANRNNNVGKFVRRIEMVQRRSIMYYQQLDCQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTYESNVLFALRFMIDCNVVGGNWIEIPAGKYKRAKKALSHCQLEFDCLFSELISHAPEGEYSKMAPFRILSFDIECAGRKGHFPEPIHDPVIQIANLVTLQGEDQPFIRNVMTLKSCSPIVGVDVMSFDTESEVLLAWRDFIREVDPDIIIGYNICKFDLPYLIERAATLKIAEFPILGRIRNSRVRVKDTTFSSRQLGTRESKEVTVEGRVQFDLLQVMQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQRNMVIPNVKQAGSGSEQGTFEGATVLEPQAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDARKLNIPPESVNKTPSGETFVKSNLQKGILPEILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTMLNGYGHTAEVIYGDTDSVMVQFGVSSVEEAMKLGREAAEYISGTFIQPIKLEFEKVYFPYLLISKKRYAGLFWTKPDKFDKMDAKGIETVRRDNCLLVKNLVNDCLHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKNYEKSEDPIFVLENNIPIDPHYYLENQISKPILRIFEPILKNASNELLHGSHTRSISISTPTNGGIMKFAKKQLTCIGCKALLSNGNHTLCSHCKGREPELYCKTVAQVSDLEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEARLQLDRWNF* 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4483 1090 CDD DNA_polB_delta_exo 291 520 - -
Lja1g4483 1090 SMART polmehr3 295 756 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lja1g4483 1090 CDD POLBc_delta 571 964 - -
Lja1g4483 1090 Pfam C4-type zinc-finger of DNA polymerase delta 1000 1071 IPR025687 -
Lja1g4483 1090 ProSitePatterns DNA polymerase family B signature. 744 752 IPR017964 GO:0000166|GO:0003676
Lja1g4483 1090 Gene3D - 296 514 IPR036397 GO:0003676
Lja1g4483 1090 SUPERFAMILY DNA/RNA polymerases 553 966 IPR043502 -
Lja1g4483 1090 Gene3D Helix hairpin bin 645 697 - -
Lja1g4483 1090 Gene3D Palm domain of DNA polymerase 572 801 IPR023211 -
Lja1g4483 1090 PANTHER DNA POLYMERASE DELTA CATALYTIC SUBUNIT 84 1090 - -
Lja1g4483 1090 Pfam DNA polymerase family B, exonuclease domain 121 464 IPR006133 -
Lja1g4483 1090 Gene3D DNA Polymerase, chain B, domain 1 91 268 - -
Lja1g4483 1090 Gene3D - 818 973 IPR042087 -
Lja1g4483 1090 PRINTS DNA-directed DNA-polymerase family B signature 681 693 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lja1g4483 1090 PRINTS DNA-directed DNA-polymerase family B signature 742 750 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lja1g4483 1090 PRINTS DNA-directed DNA-polymerase family B signature 589 602 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lja1g4483 1090 MobiDBLite consensus disorder prediction 1 31 - -
Lja1g4483 1090 SUPERFAMILY Ribonuclease H-like 112 534 IPR012337 -
Lja1g4483 1090 TIGRFAM pol2: DNA polymerase (pol2) 568 961 - -
Lja1g4483 1090 Pfam DNA polymerase family B 528 963 IPR006134 GO:0000166|GO:0003677
Lja1g4483 1090 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 84 1090 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4483 Lja-Chr1 58348961 58363605 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4483 30 1090 Core DNA Replication Machinery Family AT5G63960 81.499 0.0 1844
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4483 K02327 - gmx:100817379 1977.6