Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4482 ATGAAGTTAATCGGCGACGGTGGCGCCGGCGGTGGCCGGAAAGTACTCGTCGGAGTAAAGCTAGATCCCCGGAGCCGTGAACTGCTCACTTGGGCTCTCGTCAAGGTAGCACAGCCCGGCGACCTCGTCATTGCTCTTCACGTCCTCGACACCATCACCGAAGGAACTTCGTCGCTGCTTTCTCTCGTGAAGACCTTCGATTCCGTTCTCGCCGTCTACGAAGGCTTCTGCAATTTAAAGCAGGTTGATCTCAGGCTCAAAGTACTTAGAGGCGAATCGGTTCGGAAGCTTCTAGTACAGGAGGCGAAGTCTTCCGGCGTGGCCACGGTGATTCTCGGAACTTCGAAGTCTCATCATCCGATTCGGTCGTCGGCAAAGGTTGCTAAGTACTGCGCAAAGAAATTGCCTAAGTGTGTCTCTGTGTTTGCTGTTGATAATGGCAAAATTGCATTCCACAGAGAAGCTTCTAGAACTTGTAGTACTAGTGAACAAGATAAATTACATGATGATCTAAATTTCTCAACGAAATCGTTGGTGCCTTATACAAAGAGAAGAAGGGTGAAGAATTGTGAAACTTGTGCATTGCAAGAGGCTTCTGAATCTGAATTTGAGCAAGGGGTTCCTGAAAATCCACTTGCTATGGTACCATATCAGAAACTTGATGGTGATGATGATGCTTGTTCTTATTCAATTACAGTGGGTGATTCTAAACAGTCAAAACCTGGTTGGTCATTTCTTCGCCAGGTGTTTCATCCCAGAAAGCATAGTCCCAAGTCTTCCATGAAAAATTCATTTGTTCTACAAAGGGCATTACCTAGTTATCATTCTTCAGCTGTAGTCCATCCAGATGATAAAGAAGTTACTATTGAGCAGAATGATGGTTCCACCCTTGATGGGGTGAGTGGTGCCATTGTGCCATTTGGATCTACTTCTATTTTGCCTGCTCCATCCTTTTGCAGTGACTTGAATAGCTTGCCTGATGAATTGATGGGCTTGCAAGAGAAGTACTCATCTTCATGCAGAATATATAGTTTGCAGGAACTTGTATCTGCAACCGGCAACTTCTCAAACGAAAATTTGGTTGGCAAAGGTGGTAGTAGTAATGTTTACAGAGGATGTCTTCCAGATGGCAAGGAATTGGCTGTGAAAATTTTGAAGCCATCTGAAAATGTGCTTAAAGAGTTTGTTCAGGAAATTGAGATAGTTACAACTTTGAATCACAAGAACATAATCTCACTGTCTGGTTTTTGTTTAGAAGACAACTATTTACTACTGGTTTATGATTTTTTATCAAGGGGAAGCCTAGAAGAAAACCTTCATGGTAATAAGAAGGACCATAATGCATTCGGTTGGCAAGAGAGGTACCGGGTGGCTGTGGATGTAGCTGAGGCATTGGACTATCTGCATAATAGCTGTGCACAGGCTGTGATCCATAGGGATGTGAAATCTTCAAATGTCCTTCTTTCAGATGATTTTGAAGCTCAGCTCTCAGATTTTGGATTGGCTAGTTGGGATTCTTCTACTTCTTCCCATATTATTTGTACTGATGTGGCCGGAACTTTTGGATACCTAGCACCTGAATACTTTATGCACGGTAAAGTAACAGACAAGATTGATGTATATGCTTTTGGTGTTGTACTCCTTGAGCTTCTATCAAATAGGAAGCCCATTAACAATGAATCTCCAAAGGGTCAGGAGAGCCTTGTTATGTGGGCAACACCAATTTTGAAAGATGGGAAGCTTTCCCAGTTGCTTGATCCAAGCATAGGTAGTGATTACGATCATTGCCAAATCAATAGAATGGTTTTGGCTGCTACTCTCTGCGTCAGACGAGCTCCTAGATTGCGACCTCAAATCAGCCTTATATTGAAACTTCTACGTGGTGACGAAGAAGTGACAAGATGGGCAGAACTAGAAGTTAGTGCACCACAGGAACATGATGGATTTGATGAGGAACCGGTTCTAACCAATATTCAGTCCCACCTCAACCTTGCATTGCTGGACTTGGAGGATGATGCAGTTTCTATCAGTAGCAGTGAGCAGAATGTATCAATGGAGGACTATTTGCAGGGAAGATGGAGTCGCTCTTCTAGTTTCGACTAA 2103 0.4351 MKLIGDGGAGGGRKVLVGVKLDPRSRELLTWALVKVAQPGDLVIALHVLDTITEGTSSLLSLVKTFDSVLAVYEGFCNLKQVDLRLKVLRGESVRKLLVQEAKSSGVATVILGTSKSHHPIRSSAKVAKYCAKKLPKCVSVFAVDNGKIAFHREASRTCSTSEQDKLHDDLNFSTKSLVPYTKRRRVKNCETCALQEASESEFEQGVPENPLAMVPYQKLDGDDDACSYSITVGDSKQSKPGWSFLRQVFHPRKHSPKSSMKNSFVLQRALPSYHSSAVVHPDDKEVTIEQNDGSTLDGVSGAIVPFGSTSILPAPSFCSDLNSLPDELMGLQEKYSSSCRIYSLQELVSATGNFSNENLVGKGGSSNVYRGCLPDGKELAVKILKPSENVLKEFVQEIEIVTTLNHKNIISLSGFCLEDNYLLLVYDFLSRGSLEENLHGNKKDHNAFGWQERYRVAVDVAEALDYLHNSCAQAVIHRDVKSSNVLLSDDFEAQLSDFGLASWDSSTSSHIICTDVAGTFGYLAPEYFMHGKVTDKIDVYAFGVVLLELLSNRKPINNESPKGQESLVMWATPILKDGKLSQLLDPSIGSDYDHCQINRMVLAATLCVRRAPRLRPQISLILKLLRGDEEVTRWAELEVSAPQEHDGFDEEPVLTNIQSHLNLALLDLEDDAVSISSSEQNVSMEDYLQGRWSRSSSFD* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4482 700 SUPERFAMILY Protein kinase-like (PK-like) 336 626 IPR011009 -
Lja1g4482 700 Gene3D Phosphorylase Kinase; domain 1 326 429 - -
Lja1g4482 700 Pfam Universal stress protein family 13 139 IPR006016 -
Lja1g4482 700 ProSitePatterns Protein kinases ATP-binding region signature. 361 383 IPR017441 GO:0005524
Lja1g4482 700 SMART serkin_6 355 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4482 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Lja1g4482 700 Gene3D Transferase(Phosphotransferase) domain 1 430 642 - -
Lja1g4482 700 Pfam Protein kinase domain 356 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4482 700 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 9 694 - -
Lja1g4482 700 ProSiteProfiles Protein kinase domain profile. 355 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4482 700 PANTHER OS01G0253100 PROTEIN 9 694 IPR045271 GO:0004714|GO:0006468
Lja1g4482 700 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 13 121 - -
Lja1g4482 700 Gene3D HUPs 12 145 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4482 Lja-Chr1 58322687 58326461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4482 343 626 Trihelix Transcription Factor Family AT1G70460 43.945 1.04e-75 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lja1g4482 Pkinase 3.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4482 - - gmx:100815722 1059.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4482 1 58322687 58326461 Lja1g4482 1 58322687 58326461 ECH
Lja1g2383 1 27537223 27541826 Lja1g4482 1 58322687 58326461 ECH
Lja1g5813 1 103982213 103986464 Lja1g4482 1 58322687 58326461 PCT