Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4477 ATGTCAGGGAAGGGGAAGAAGAGGGACGACCTAGACCGCGCTTCCGACGCCGACTCCGACAGCCACGCTCCGCCCAAAAAGTCCCTCAAGAAAGATTCTGATGAAGATCCCGATTCCATCGTCGTCTGCGAGATTTCGAAGAACAGGAGGGTTTCTGTGAGGAACTGGCAGGGGAGGATCGTGGTCGACATTCGCGAATTTTATGTCAAAGACGGCAAGCAAATGCCTGGGAAGAAAGGTATCTCATTGACCATGGATCAGTGGAATGTGCTACGTAATCACATTGAAGAAATAGACAAGGCAGTCAATGAGAGTGGTTAG 321 0.5047 MSGKGKKRDDLDRASDADSDSHAPPKKSLKKDSDEDPDSIVVCEISKNRRVSVRNWQGRIVVDIREFYVKDGKQMPGKKGISLTMDQWNVLRNHIEEIDKAVNESG* 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4477 106 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 1 103 IPR045125 GO:0003713|GO:0060261
Lja1g4477 106 PANTHER BNAC09G47220D PROTEIN 1 103 - -
Lja1g4477 106 SUPERFAMILY ssDNA-binding transcriptional regulator domain 42 103 IPR009044 GO:0003677|GO:0006355
Lja1g4477 106 MobiDBLite consensus disorder prediction 1 39 - -
Lja1g4477 106 Pfam Transcriptional Coactivator p15 (PC4) 43 94 IPR003173 GO:0003677|GO:0006355
Lja1g4477 106 Gene3D Transcriptional Coactivator Pc4; Chain A 30 106 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4477 Lja-Chr1 58191643 58194076 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Lja1g4477 PC4 3.4e-25 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4477 K25815 - gmx:100820368 171.014