Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4459 ATGTTGGGGAGTTCTTCATCTTCATCTTCTGCTGCTGCTATTGTTATGACTCCTCCAAAGTATGATGTGTTCTTGAGCTTTAGAGGAGAAGACACACGTGACAACTTCACTAGTCATCTTTATGATGGTCTTTGTAGGAAAAGGATCCAAACATTTATAGATTACAGGCTAGACAAAGGCGATGCAATCTCACCTGAACTGTGCAAAGCAATGGAAGAATCAATGATTTACATCATCATTTTCTCCCAACACTACGCTTCTTCCTCGTGGTGTTTGGATGAACTCGACAAGATTCTGAAATGCAAGAAGAGATATGGAAGGAATGTGATACCGGTTTTCTACAAGGTGGATCCATCAAATGTTAGGCATCAGGAAGGGTGTTATAAAGATGCATTTGTTAAGCATGAAAAGCGATTTCGGGACGAAGTAATACAGACGTGGAAGGATGCTCTAACCGAAGCAGCTGCAATCTCTGGCTGGGATTCAAACACCACTAGACCAGAATCCATGCTTGTTGATGGTATTGTGGAAGATATTTTAAGAAAATTGGATCGTTCTTTTTCAAGTGACGATCATAGAATGGTTGGAATTGACAAGCACATTGCACAAATCCAGTCCTTGTTGCAGCTTGAGCCAGAAGCGGTTCGGATCATAGGAATTTGGGGCATGGGAGGAATAGGTAAAACTACACTGGCTCGGACACTACATCACAAACTGGCGACCCAATTCAGTTCCAGGAGTTGTGTTGTAAATGCTCAGCAAGAAATAGAAAAAGATGGAATTGACTGTCTACATAAAAAATATTTATCAGAACTTCTAGAGGAAGATATCTCGTCAAATGGATTGCATTTTGCTATTGAAAGGGTCAAACGGGCAAAGGTTCTCCTTATTCTTGATGGGGTGAAAACTTCGAGTCAAATTCAAGAGTTAATTGGAGGGCATGGAAACTTCGGCCAGGGAAGTAGAATCATTGTGACTAGCAGAGACATGCAGGTGCTTAGGAATGCTGAAGCTGATGATATACATGAAGTCAAGGAGATGAATCCCCAAGATTCTCTGCAGCTCTTCAGTTTATATGCCTTTAAACAAATCTGCCCCATGGAAGGTTATGCTGACTTAGTAGAAAAGGTATTGGAATATGCTAAAGGGGTTCCATTAGCTCTCAAAGTTTTAGGCTCACTGCTTTATGGTAGAACAAGGAAAGCATGGGAAAGTGAGCTGCAAAAGCTGGAAAAGCTTCCTGAGATTGAGATTTTCAATGTGTTGAAATTAAGCTATGATGGGCTGGATGGTGAACAGAAGGACATATTTCTTGACATAGCTTGCTTATATGTAGGCGATTTTGTGAATGATGTAGTGGATATGCTAAATGGTTGTGGTTTCTCTGCTGACATTGGAATGCATGTTCTGAAAGATAAGAGCCTTATATCTACTTTAAGAGATCGCATCGTGGTGCATGATCTAATAGTGGAAATGGGAAAACAAATTGTTCGTCAAGAATGTGTCAATCATCCTGGAAAACGCAGTCGTCTATGGGACCATGAAGAAATTTATGATGTTTTAAGAAACAACCAGGGGACGGATGCAGTCCAATGTATATTCCTCGCCATGTGGAGGATAAAAAAACTTGAAGTTCATCCAAAAAGTTTCAAAAGCATGCCTAATCTGAGAATGCTTTGTTTCCATAACTATTTTCCGGGAAGACGTCAAACAAATGTGATCCTTCCTGCATGTGTTGAAAGTCTTTCGAATAGTTTAAAACTTCTTGATTGGGATGAATTTCCTCAAAGATCTTTGCCGTTGGACTTTTGTCCAAAAAATCTTGTTGAACTTTTGATGCAATATAGCAGCGATCTTGAACAACTTTGGGAGGATGATCAGGAATTACCGAATTTGAAAAGGCTCGATCTTCGTGCTTCTTTGAACTTGATTCGAATACCAGACCTTTCTAAGTTCCCAAATATTGAAGAAATTATTCTTAGTGGTTGTGAAAGTTTGATTCAAGTTTACTCCTCGAGTTTCCTCTGCAAGCTCAAATTATTATATTTAAATGGTTGTCTTGAGCTTACGAGTTTAGATCTTTCTAGTAATGCTCTATCAAGAACTTCTGGATTAGTGGGGCTCTACAATTGTTGTAAACTGGAAACGTTTTCAATCAATAGAACTGAGGTGGTTCAATCACGTGGTTGTTCCCAAATTTACGATGATGTGAAATTTCGCTGGACTTACCTAGAAGGCACCTCTGGCTATCAAGACATGAATGGAAGAGATCTGGGTGAAAAATCTTGTATAGAGATTGAAGATTTGAGAGAAAATTTGCCTTCACAGCTTTCCCAGGAGCTTTGTTGGTTAGATCTCGGTAAATGTAAGTTATTTACAAGCCTTCCAATTGACCTTTGTAAGTTGAAATTGCTAAGAAGACTTTATCTAAGTGGCTGCTCTAATTTGAACAAAATCCCTGAAATCGAGGAGACACTAGAAAATTTAGCCGTGCTTGTCTTAGACGAAACAGCAATACAAGAACTACCTTCATCCTTACACCGTTTGGTGGGGCTTGAAGAGCTGAGCTTGCGTAGTTGCCGAAGGCTTGAAATTATTCCCTCCTCGATTGGAAGACTCACCAAACTCTGTAAGTTAGACCTTGCCTATTGTGAATCACTTGAAACTTTTCCACGCAGCATTTACAAATTGAAGTTGACAAAACTTAATTTGTTTGGTTGCTCAAAGCTAAAGAACTTCCCAGAGATCTTGAATCCTGCAGAAAGTTTTGCTCACATTGACTTATCATGGACAGTAGTTAAAGAACTGCCTTCATCATTGGACTGTTTGGTGGGTCTTCAAACCTTGTGTCTGAACTGGTGCTGTGGTCTGGAGTCACTTCCAAACAGTATTGGTAATCTAAGCCTTCTCTCTGTGCTTGACTGTTCAGCCTGTCGTAAATTAACAGAAATCCCAAATGACATAGGCCGCTTGTCATCATTAAGGGAACTGTCATTGCGAGGTACCGGAATCGTGTACCTTCCAGAGAATTTGGCTCATCTTTTATGCTTGGAATCTCTTGATGTAAGTGACACCAGAATCGTGAGCCTTCCAGAGAGTATTGCTCATCTTACAAGTTTGAAATCACTTAATGTAAGTGAATGCAGACAGCTTGATTGTATCCCACAGCTTCCACCATTTCTGAATCAGTTATTGGCATTAAAGTGCCCATCGATTAGAAGAATGATCGGTGAGGATGCGTATAGGTTTGAGTTCTTTTGCTTTCCAGGGAGTGCAGTTCCTAATTGGTTCCCCTATCGTTGCGAGGGAAATTCAATTACTGTGGGTAAAGATTCTCTAGATTGGTGCAATGATGATAGGCTCATTGGTTTTTCTATGTGTGTCGTTTTGCGGTTTGAAAAGAAAAACTATACAAAAGATAGTATTCGTGATTTTAGATGCAGATTAACATTTGAGTCTGATGGCCAAATATACATCATTCCCAACAATAATAAGTTAAACGACTATTTCAGTTTTTGTTGTTATAGAATGGGACATGTCGAGCACACATTCCTATGGAAACATTACTTAATGGTCTCTGCAAGCATCGACAGAGGGACCTTTCATGCTGACAACTTCACTTTTGACTTCGAGGGCAAGAATCAGCAGAGTTTTAAATTATATCCTGAGGTGAAAGAGTGCGGTATATGCCCTCTTTATTCCAAAGAAAAAGATGACTTTGAAGAACGTTGTGAGAAGAGGCAGTGTCTAAGGTGA 3756 0.3978 MLGSSSSSSSAAAIVMTPPKYDVFLSFRGEDTRDNFTSHLYDGLCRKRIQTFIDYRLDKGDAISPELCKAMEESMIYIIIFSQHYASSSWCLDELDKILKCKKRYGRNVIPVFYKVDPSNVRHQEGCYKDAFVKHEKRFRDEVIQTWKDALTEAAAISGWDSNTTRPESMLVDGIVEDILRKLDRSFSSDDHRMVGIDKHIAQIQSLLQLEPEAVRIIGIWGMGGIGKTTLARTLHHKLATQFSSRSCVVNAQQEIEKDGIDCLHKKYLSELLEEDISSNGLHFAIERVKRAKVLLILDGVKTSSQIQELIGGHGNFGQGSRIIVTSRDMQVLRNAEADDIHEVKEMNPQDSLQLFSLYAFKQICPMEGYADLVEKVLEYAKGVPLALKVLGSLLYGRTRKAWESELQKLEKLPEIEIFNVLKLSYDGLDGEQKDIFLDIACLYVGDFVNDVVDMLNGCGFSADIGMHVLKDKSLISTLRDRIVVHDLIVEMGKQIVRQECVNHPGKRSRLWDHEEIYDVLRNNQGTDAVQCIFLAMWRIKKLEVHPKSFKSMPNLRMLCFHNYFPGRRQTNVILPACVESLSNSLKLLDWDEFPQRSLPLDFCPKNLVELLMQYSSDLEQLWEDDQELPNLKRLDLRASLNLIRIPDLSKFPNIEEIILSGCESLIQVYSSSFLCKLKLLYLNGCLELTSLDLSSNALSRTSGLVGLYNCCKLETFSINRTEVVQSRGCSQIYDDVKFRWTYLEGTSGYQDMNGRDLGEKSCIEIEDLRENLPSQLSQELCWLDLGKCKLFTSLPIDLCKLKLLRRLYLSGCSNLNKIPEIEETLENLAVLVLDETAIQELPSSLHRLVGLEELSLRSCRRLEIIPSSIGRLTKLCKLDLAYCESLETFPRSIYKLKLTKLNLFGCSKLKNFPEILNPAESFAHIDLSWTVVKELPSSLDCLVGLQTLCLNWCCGLESLPNSIGNLSLLSVLDCSACRKLTEIPNDIGRLSSLRELSLRGTGIVYLPENLAHLLCLESLDVSDTRIVSLPESIAHLTSLKSLNVSECRQLDCIPQLPPFLNQLLALKCPSIRRMIGEDAYRFEFFCFPGSAVPNWFPYRCEGNSITVGKDSLDWCNDDRLIGFSMCVVLRFEKKNYTKDSIRDFRCRLTFESDGQIYIIPNNNKLNDYFSFCCYRMGHVEHTFLWKHYLMVSASIDRGTFHADNFTFDFEGKNQQSFKLYPEVKECGICPLYSKEKDDFEERCEKRQCLR* 1252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4459 1251 SUPERFAMILY "Winged helix" DNA-binding domain 417 521 IPR036390 -
Lja1g4459 1251 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 160 IPR035897 -
Lja1g4459 1251 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 14 719 - -
Lja1g4459 1251 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 946 1057 - -
Lja1g4459 1251 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 719 IPR044974 GO:0006952
Lja1g4459 1251 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 946 1057 IPR044974 GO:0006952
Lja1g4459 1251 SUPERFAMILY RNI-like 586 861 - -
Lja1g4459 1251 Pfam NB-ARC domain 199 412 IPR002182 GO:0043531
Lja1g4459 1251 Pfam TIR domain 20 191 IPR000157 GO:0007165
Lja1g4459 1251 SMART AAA_5 214 348 IPR003593 -
Lja1g4459 1251 PRINTS Disease resistance protein signature 965 981 - -
Lja1g4459 1251 PRINTS Disease resistance protein signature 217 232 - -
Lja1g4459 1251 PRINTS Disease resistance protein signature 288 302 - -
Lja1g4459 1251 PRINTS Disease resistance protein signature 381 395 - -
Lja1g4459 1251 Gene3D - 186 343 IPR027417 -
Lja1g4459 1251 ProSiteProfiles TIR domain profile. 19 183 IPR000157 GO:0007165
Lja1g4459 1251 Gene3D Ribonuclease Inhibitor 516 747 IPR032675 -
Lja1g4459 1251 Pfam C-JID domain 1088 1236 IPR045344 -
Lja1g4459 1251 Gene3D Ribonuclease Inhibitor 761 919 IPR032675 -
Lja1g4459 1251 Gene3D Ribonuclease Inhibitor 920 1079 IPR032675 -
Lja1g4459 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 440 IPR027417 -
Lja1g4459 1251 Gene3D - 347 430 IPR042197 -
Lja1g4459 1251 ProSiteProfiles Leucine-rich repeat profile. 688 709 IPR001611 GO:0005515
Lja1g4459 1251 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 778 870 IPR044974 GO:0006952
Lja1g4459 1251 SMART till_3 20 157 IPR000157 GO:0007165
Lja1g4459 1251 Gene3D - 19 185 IPR035897 -
Lja1g4459 1251 SUPERFAMILY L domain-like 774 1067 - -
Lja1g4459 1251 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 778 870 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4459 Lja-Chr1 57993442 57997752 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4459 21 862 WRKY Transcription Factor Family AT4G12020 31.908 2.07e-98 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4459 - - lja:Lj1g3v1361010.2 1851.25