Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4458 ATGAAGGGTGAATTAGAGTTGCCACCTGGGTTCAGATTCCACCCAACAGATGAAGAATTGGTGAACCACTACCTCTGCACAAAATGTGCTGGCCAATCCTTCAACTACTCCGTTATCAAAGAAATCGATTTGTACAAGTTTGATCCATGGCAGCTTCCAGAAATGGGTTTTGATGGCGAGAAAGAATGGTACTTCTTTTCTCCGAGAGACCGGAAGTATCCGAATGGTTCCCGGCCGAACCGGGCGGCCGGGAGCGGGTATTGGAAGGCTACTGGAGCTGATAAACCGATTGGGAAGCCCAAGGCGTTGGGGATTAAGAAGGCACTGGTGTTTTATGTGGGGAAAGCACCTAAAGGAATCAAAACGAATTGGATCATGCATGAGTATCGTCTTGCCAATGTTGATAGATCAGCTGGAAAGAAAAGCAACTTGAGGCTTGATGATTGGGTGTTGTGTAGAATTTACAACAAGAAAGGGAAGATTGAGAAATACAACACCCCCACACCAAAGTTTTCAGGTTTAGGGGAGGTTCATGATAGTTATGATGAGCATGAGCATGAGAGGAAGCCAGAGATTCATGATCAATTGTACATGGAGGCATCAGATTCAGTGCCCAGGCTGCACACGGATTCGAGTGGCTCGGAGCATGCGGCTTCACCTGATGTCACGTGTGACAAGGAGGTGCAGAGCGAGCCTCAGTGGAATAATGAGCTAGAGTTCAAGCTGGATGATGGCACCTTTGATTTTCAGTTCAGTTTCTTGGATGATAACAACATGTCGGTGGATGAGTACCAACTGAACCAGTTATCACCGTTGCAGGATATGTTCATGTACCTGGAAAAGCCATTTTGA 852 0.4648 MKGELELPPGFRFHPTDEELVNHYLCTKCAGQSFNYSVIKEIDLYKFDPWQLPEMGFDGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKPKALGIKKALVFYVGKAPKGIKTNWIMHEYRLANVDRSAGKKSNLRLDDWVLCRIYNKKGKIEKYNTPTPKFSGLGEVHDSYDEHEHERKPEIHDQLYMEASDSVPRLHTDSSGSEHAASPDVTCDKEVQSEPQWNNELEFKLDDGTFDFQFSFLDDNNMSVDEYQLNQLSPLQDMFMYLEKPF* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4458 283 Gene3D NAC domain 16 162 IPR036093 GO:0003677|GO:0006355
Lja1g4458 283 MobiDBLite consensus disorder prediction 204 224 - -
Lja1g4458 283 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Lja1g4458 283 PANTHER NAC TRANSCRIPTION FACTOR 56 5 264 - -
Lja1g4458 283 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Lja1g4458 283 MobiDBLite consensus disorder prediction 168 187 - -
Lja1g4458 283 PANTHER NAC DOMAIN-CONTAINING PROTEIN 2-LIKE 5 264 - -
Lja1g4458 283 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4458 Lja-Chr1 57978057 57979789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4458 1 283 NAC Transcription Factor Family AT1G01720 59.667 4.21e-118 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja1g4458 NAM 4.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4458 - - gmx:100814504 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4458 1 57978057 57979789 Lja1g4458 1 57978057 57979789 ECH
Lja1g4458 1 57978057 57979789 Lja4g0565 4 4698919 4700588 ECH