Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4453 ATGGGAGACGGCACCTCCGGGAGCCGTAGCAGCGGCAGCAACAAGCCGGAGTGGCTGCAGCAGTATGATCTGATAGGGAAGATCGGAGAAGGAACCTACGGTCTCGTCTTCCTCGCTCGGATCAAGTCTCAAACCAATCGCGGAAAATCCATCGCCATCAAGAAATTCAAGCAATCCAAGGATGGCGACGGTGTTTCTCCCACCGCCATTCGTGAAATCATGTTACTGAGGGAGATAACACACGAGAATGTTGTGAAGCTTGTGAATGTTCACATCAATCATACTGACATGTCTCTGTATCTAGCTTTCGATTACGCCGAACATGACCTTTATGAAATAATAAGACATCATAGAGACAAGGTTAACCAATCCATTAACCAGTACACGGTTAAATCGTTACTATGGCAGTTGCTCAATGGACTAAACTATCTGCACAGTAATTGGATTATACATCGAGATTTAAAGCCATCAAATATATTGGTTATGGGTGAAGGGGAGGAACATGGAGTTATTAAAATTGCTGACTTTGGACTTGCGAGGATATATCAAGCCCCTTTGAAGCCATTATCTGAAAATGGGGTTGTTGTAACCATTTGGTATCGTGCGCCTGAGTTGCTTCTTGGAGCGAAACATTACACCAGTGCTGTTGATATGTGGGCTGTGGGATGCATTTTTGCTGAGTTGTTGACCTTGAAGCCACTATTTCAAGGTGCAGAAGTCAAAGCCACACCTAATCCTTTTCAGCTCGATCAACTTGACAAGATATTCAAGGTTTTAGGCCATCCCACATTAGAAAAGTGGCCTTCCTTACCAAATCTTCCCCATTGGCAACAAGATACGCAACATATACAAGCGCACAAATATGACAATGCTAGCCTCAATGGTGTTGTACACTTATCTCCAAAAAGTCCTGCATATGACCTCTTGTCAAAGATGCTTGAATATGATCCTCGAAAGCGTATAACAGCAGCACAAGCTTTGGAGCATGAGTATTTCAAAATGGATCCACAACCTGGGCGGAATGCACTTGTACCCTGCCAACCTGGAGAGACATTTGTGAATTATCCCACACGTCCAGTGGACACAACAACAGATTTTGAAGGGACAGCCACCATGCAATCTTCTCAGCCGGTATCATCTGGAGCTGCAGGCAGCATGCCTGGTGGTCATGCATCAAGATCTGTCCCTCGGCCAGTGAATGTTGTTGGCATGCAAAGAATGCATCACCCGGGAATGCAAGCTTATAATCTCACGTCCCAGGCAGGGATGGGCAGTGGAATGAATCCTGGTGGAATCCCAATGCAGCGAGGTGTTCCACAAGGCAATCAGCAGCAACAGCTGAGGAGAAAAGATCAAATGGGGATGCCCGGATACCCTCCACAGCAGAAGTCAAGGCGTATGTAA 1404 0.4601 MGDGTSGSRSSGSNKPEWLQQYDLIGKIGEGTYGLVFLARIKSQTNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHTDMSLYLAFDYAEHDLYEIIRHHRDKVNQSINQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEHGVIKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATPNPFQLDQLDKIFKVLGHPTLEKWPSLPNLPHWQQDTQHIQAHKYDNASLNGVVHLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFKMDPQPGRNALVPCQPGETFVNYPTRPVDTTTDFEGTATMQSSQPVSSGAAGSMPGGHASRSVPRPVNVVGMQRMHHPGMQAYNLTSQAGMGSGMNPGGIPMQRGVPQGNQQQQLRRKDQMGMPGYPPQQKSRRM* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4453 467 Pfam Protein kinase domain 22 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4453 467 PANTHER CELL DIVISION PROTEIN KINASE 11 466 - -
Lja1g4453 467 Gene3D Transferase(Phosphotransferase) domain 1 105 347 - -
Lja1g4453 467 MobiDBLite consensus disorder prediction 370 396 - -
Lja1g4453 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Lja1g4453 467 PANTHER CYCLIN-DEPENDENT KINASE E-1 11 466 - -
Lja1g4453 467 CDD STKc_CDK8_like 21 332 - -
Lja1g4453 467 Gene3D Phosphorylase Kinase; domain 1 9 104 - -
Lja1g4453 467 SUPERFAMILY Protein kinase-like (PK-like) 17 334 IPR011009 -
Lja1g4453 467 MobiDBLite consensus disorder prediction 417 467 - -
Lja1g4453 467 ProSitePatterns Protein kinases ATP-binding region signature. 28 55 IPR017441 GO:0005524
Lja1g4453 467 ProSiteProfiles Protein kinase domain profile. 22 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4453 467 SMART serkin_6 22 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4453 Lja-Chr1 57899023 57909648 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4453 1 467 Core Cell Cycle Gene Families AT5G63610 75.472 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Lja1g4453 Pkinase 3.6e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4453 K02208 - gmx:100813433 839.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4453 1 57899023 57909648 Lja1g4453 1 57899023 57909648 ECH