Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4433 ATGGTGGAAGGGAAAGAAATTAGTGTAAGTAGGTGGAATGTGATGGGCCTTAATGGTGGTGCTGGATGCGGCAGCTTCTTCATCCGGTCTAACAATCAGGACTATCACAATATGTTTGCTAATCTTGTACAAATTAAAAGAAGGGATGGTAGTTTCAAGATTATCAATGTCGATGTTTCAGAGGAATTGCAAGGGTTGACTGGTATTGATGTCCTTTCCATTCAATTTGATTCTTGTGAAGCTGGGGAATCCTTTTACCATAAATATGCTTCAGCTATAGGCTTTGTTGTTGAAGAGGATTATATAAAAAGAAACGAGCATGGTGAGGTTGTCCAGAAAAGATGGGCTTGTAACTGTGAAGGAGGCTTTCAGCAAAAGAAATATCTACAAGATGGATTTAATTGCTTTGCTACATTTTGCATACACCTTGTTAGCCATAAGTGGTTAGTAAGAGACTTTGTGGCAACACACACACATCGGTTGTCACCAACATGCAAACCACATCACCAAATTGATCCTTCTCAGAACAATTTAGTGAATGCAAAAAGGAAAAATCTTGTGGTTTCACTGCGCACTTTACTGAAACTTATCACACCCATCACTACATTCCAATACCAAGGCTTTCTTAAAACATCAATTATGGTCGAAGGGAAAGAAACAAATGTAAGTGGGTCGAATGTGATGAGCCTTAATGGTGGTGCTTGTTGTGGCAGCTTCTTCATCAGGGATAACAATCAGGACTATCACAACATGTTTCCTATTCTTGTACAAAATAAAAGAAGGGATGGTAGTTTCAAGATTATAAATGCGGACAATTCAAGGGAACTGCAAAGGTTGACTGAAATTGATGTCATTCCCATGCAATTTGCTGAAGAAGGCTTTCAGCAAAAGAATCATCTAGAAGATGGATTTAATTGTTTTGCTGCATTTTGCAGACACGTTGTCAACCATAAGTGGTCTGTAAAAGAGTTTGTGGAAGCACACATACATCATGAGCTGACTCCAACATGCAAATCTCATCTCCAAATTGATTCTTCTCCGAAGAATTTAGTGAATGTGAAAAGGAAAAGAGTGGTTAATGATCAAGCCCCTTGTAGTGCGTTGATTGCAATGAGTGATGTGGAATCTGCGAAAAGGAAAAGATTGGTTAATGCTCAAGCCCCTTGTAGATCTGAGATTCCAATCAGTGATGTGGAAGCTGCCCTTGATTTTCTAAGTGCTAAGAAGGACTCAGACAATGGCTTATTCTATGAAACAAAATTTGTTGAAGGCCATTTAACATCTCTTTTTTGGGCAGACTCTATATCTCAGTTAGATTATGCATGCTTTGGAGAGGTGATGGCAGTTTACAGGACAGAGTTATGCATGATGCACTTTGTAGTGTTGACTGGTCTCAACCATCATCATCGGACATGTGTATTTGGATGTGCTTTGCTTCAAGATGAGACTGTCGAGGCCTACACGTGGTTATTTCAAACATTCCTTCATGTAATGCAGGGTTGCATGCCCCTATCAGTGGTGACTGATGATCATCAAGCTATCCGTGAAGCTATTAAGCTTGTGTTGCCGCGATCAAGGCACCGCCTATGCACACAGCATCTTGAGAAAATAGCACGCGACAATGTTAATAACCCATTCTTCATATCTGATTTCAAAGCATGCATGTTGGAGGTTCTATCACAAGATGATTTTGAGCTTACATGGAAAAGAATGGTTGAAATGTATAAAGTGTCTGAAAATCCTTGGATACAAAGGATGCATAGGGAACGTCATATGTGGGCAGAGACTTACTTGAGGGGAAGTTTCTCTGCTGGATTGCAAAGCACGAAAATATGTGAAAGCATTGATAAACATTTGAGGAAGTCTTCACAAAATAAACTGAAACTACATGAATTTCTCAACGAGTTTGAATACGCGATTAATGCACTCTGGCGGGAGGAGGGGAAGGCTGAGTGTAAATCTGCCATTTTTCAAGTGGCTCTCTCAAATCCTCTTGTGAAACATGCTGCTGATGTGTTTACTAGGGAGTCTTTCAAGAAGTTTCTTTCAGAGATGAAATTGGAGACTCTTTTGTTTGTGTTAAGCAAAGATGCTGGCACAACCCACAGAAAATACAGATTGTGTAACACTGAGAATCAGAATTTAGTCTATGATGTTATGGTCAAGCCTAGTGGTCCTCTTAAATGCTCATGCTTGAAGTTTGAGACATTGGGATTTCCTTGCTGTCATGCCATTCATGTACTCAAATATGAAGGAATAGAAAAAATTCCCCAAGATCTCATACATCTTAGATGGACAAAATCAGCAAAATCAAGTGCTCAATTTTGGCACCGTTCCTTGCCACCAGTGTCTAGTGATATTATGTTAAAAATTGTACGTTATGGCAGTTCGGCATTTATTTCTTCCATACTATGTTACTTTGGGACAAAATCAGATAAGCTACGTAACTTAGTGCTCAGTAGATTATATGAGTTGAAGCATGAAATGGAAGAGCGCTATGGTGTATCTGAAGGTAGCAGAAGAGGTTAG 2529 0.395 MVEGKEISVSRWNVMGLNGGAGCGSFFIRSNNQDYHNMFANLVQIKRRDGSFKIINVDVSEELQGLTGIDVLSIQFDSCEAGESFYHKYASAIGFVVEEDYIKRNEHGEVVQKRWACNCEGGFQQKKYLQDGFNCFATFCIHLVSHKWLVRDFVATHTHRLSPTCKPHHQIDPSQNNLVNAKRKNLVVSLRTLLKLITPITTFQYQGFLKTSIMVEGKETNVSGSNVMSLNGGACCGSFFIRDNNQDYHNMFPILVQNKRRDGSFKIINADNSRELQRLTEIDVIPMQFAEEGFQQKNHLEDGFNCFAAFCRHVVNHKWSVKEFVEAHIHHELTPTCKSHLQIDSSPKNLVNVKRKRVVNDQAPCSALIAMSDVESAKRKRLVNAQAPCRSEIPISDVEAALDFLSAKKDSDNGLFYETKFVEGHLTSLFWADSISQLDYACFGEVMAVYRTELCMMHFVVLTGLNHHHRTCVFGCALLQDETVEAYTWLFQTFLHVMQGCMPLSVVTDDHQAIREAIKLVLPRSRHRLCTQHLEKIARDNVNNPFFISDFKACMLEVLSQDDFELTWKRMVEMYKVSENPWIQRMHRERHMWAETYLRGSFSAGLQSTKICESIDKHLRKSSQNKLKLHEFLNEFEYAINALWREEGKAECKSAIFQVALSNPLVKHAADVFTRESFKKFLSEMKLETLLFVLSKDAGTTHRKYRLCNTENQNLVYDVMVKPSGPLKCSCLKFETLGFPCCHAIHVLKYEGIEKIPQDLIHLRWTKSAKSSAQFWHRSLPPVSSDIMLKIVRYGSSAFISSILCYFGTKSDKLRNLVLSRLYELKHEMEERYGVSEGSRRG* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4433 842 ProSiteProfiles Zinc finger SWIM-type profile. 717 752 IPR007527 GO:0008270
Lja1g4433 842 SMART 26again6 727 754 IPR006564 GO:0008270
Lja1g4433 842 Pfam FAR1 DNA-binding domain 84 162 IPR004330 -
Lja1g4433 842 Pfam MULE transposase domain 449 536 IPR018289 -
Lja1g4433 842 PANTHER OS01G0607050 PROTEIN 73 774 - -
Lja1g4433 842 Pfam SWIM zinc finger 717 747 IPR007527 GO:0008270
Lja1g4433 842 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Lja1g4433 842 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 73 774 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4433 Lja-Chr1 57562712 57566194 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja1g4433 MULE 1.9e-19 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4433 - - lja:Lj0g3v0084509.1 667.151