Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4427 ATGCAGGAAGACAACAAGAAGATGAAGGTGAAGAAGGGTTGGCTCGCTGTTCAAGTAGGTTTAGAAGACGACCAATTCGAACAAGAACAAGACTATGGTGGTGGTTCTTCGAATTCTCAGAGATTTGTGATTCCTATCTCTTACCTTTACCACCCTCTCTTCAAGCGTCTTCTAGACAAAGCTCGCGAGGTTTACGGCTACCACACCGACGGTCCTCTCAAGCTCCCGTGCTCCGTCGATGATTTCCTTCACCTCCGGTGGCGAATTGAGAAAGAGTCCGGTCAGAATCATCATCATAACCATTACAACAACCACCTTCATCGTCTTCCTCACGCTCTGCACTTCAAGTCTTGTTGA 357 0.4734 MQEDNKKMKVKKGWLAVQVGLEDDQFEQEQDYGGGSSNSQRFVIPISYLYHPLFKRLLDKAREVYGYHTDGPLKLPCSVDDFLHLRWRIEKESGQNHHHNHYNNHLHRLPHALHFKSC* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4427 118 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 8 106 IPR003676 GO:0009733
Lja1g4427 118 Pfam Auxin responsive protein 6 88 IPR003676 GO:0009733
Lja1g4427 118 PANTHER SMALL AUXIN-UP RNA-RELATED 8 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4427 Lja-Chr1 57468955 57469657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4427 10 90 Calmodulin-binding Proteins AT3G43120 41.975 1.51e-12 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4427 K14488 - gmx:100809305 174.481