Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4419 ATGTTTGGCAACACAGCTAAGACTGTATTTGAAGCTATTATATTTGTTTTTGTGATGCACCCGTATGATGTTGGCGATCGTTGTGTCATTGATGGCGTTCAGATGATTGTAGAAGAGATGAACATCCTGACTACAGCCTTTCTGAGATATGACAATGAAAAGATATTTTACCCAAATTATGTTCTGTCAACCAAGCCAATCAGCAACTTCTACAGGAGTCCAGAAATGTGTGATACGGTTGAATTTGCTGTGGATTTTTCTACTTCAATAGAAAGAATTGGAGCTTTAAAGGCTAAGTTAAAAGTGTACTTGGAGAGTAGGCCTCAACACTGGCGTCCGAACCACAGTGTAATTGTTAAGGATATTGAGAACGTAAACAAGATGAAAATGGCTCTATATGCTACTCACACCATCAGTTTTCAGAACTATGTGGATAAGAAAAGCCGAAGATCTGAATTAGTGCTGGAGTTAAAGAAAAATCTTGAAGATCTTAGTATTAAATATCATCTACTACCACAAGAAGTTCATCTCAGTTATGTAAGATCAGAAGACTCGACGGTACAAACAGAAAGAGTTTGA 579 0.3731 MFGNTAKTVFEAIIFVFVMHPYDVGDRCVIDGVQMIVEEMNILTTAFLRYDNEKIFYPNYVLSTKPISNFYRSPEMCDTVEFAVDFSTSIERIGALKAKLKVYLESRPQHWRPNHSVIVKDIENVNKMKMALYATHTISFQNYVDKKSRRSELVLELKKNLEDLSIKYHLLPQEVHLSYVRSEDSTVQTERV* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4419 192 SUPERFAMILY Sm-like ribonucleoproteins 11 70 IPR010920 -
Lja1g4419 192 Pfam Mechanosensitive ion channel 14 166 IPR006685 GO:0016020|GO:0055085
Lja1g4419 192 Gene3D - 21 70 IPR023408 -
Lja1g4419 192 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 1 181 IPR016688 -
Lja1g4419 192 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4419 Lja-Chr1 57401187 57402745 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4419 1 178 Mechanosensitive Ion Channel Family AT5G12080 60.674 1.81e-78 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4419 K22048 - lja:Lj0g3v0164009.1 380.948