Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4416 ATGCTTGTATTCTCTTCTTTTCCATCTCCACTCTGTGTGGGTGGTCTAAACCAAATGGCCACTGAAATTTGTGGCGGGTCTCTATTCTTATCCGTTAAAGCTCAACTGCAACTTCAACTGCCACAACTCTTCCTCCATTCTCAACGAACAACCACCACCACCAGATTCACCTCCTCCAAACCTCGCTCTCTCAATGCCCCCTCCACCTTCCACCGCCGCGGCTCCTCCGTCTTCTGCCAGGTCGCCAGCCTCTCCGACTTCGAATCCGCCGCCAAAGCCGGCGATGACCGTCTCTCTAAGGTGCCGGTGTCTAATATAAGGAACTTCAGCATCATTGCTCATATTGACCATGGCAAATCCACCTTGGCTGATAAGCTGCTTCAGGTCACCGGCACCGTCCACCAGCGAGAGATGAAGGAGCAGTTCCTTGATAACATGGATTTGGAGCGAGAAAGAGGCATCACTATTAAGCTGCAGGCAGCTCGAATGCGATATGTGTTTGGAAATGAAGCATATTGCTTGAATTTAATAGATACTCCAGGGCATGTCGACTTCTCGTATGAGGTTTCTCGATCACTTGCTGCTTGTGAGGGTGCTCTCTTAGTAGTAGATGCTTCTCAGGGGGTTGAAGCACAAACACTAGCTAATGTTTATTTGGCATTGGAGAACAACCTAGAAATTATCCCTGTTTTGAACAAAATAGACCTTCCAGGTGCAGAACCAGAACGAGTTATCAAGGAGATTGAAGAGATTGTAGGTCTAGATTGTAGCAACGCAATTCTCTGCTCTGCAAAGGAAGGAATAGGTATTATCGATATTCTCAATGCAATTGTTGCTAGAGTTCCCCCACCTGCTGATACATCGAAAAGACCATTGAGGGCTTTAATATTTGATAGTTACTATGATCCATATAGAGGTGTTATTGTTTACTTTCGAGTTGTAGATGGAACTATAAAGAAAGGGGACAGAATTCATTTTATGGCTAGTGGTAAGGATTATTTTGCTGATGAAATTGGAGTTTTGTCTCCCAATCAACTTCAAGCTAAAGAACTGTATGCTGGTGAGGTGGGCTATTTATCTGCATCAATAAGAACAGTAGCTGATGCCAGAGTAGGTGACACTATTACTCACTATGCCAGAAAGGCAGATAATTCTCTCCCTGGCTATGAGGAAGCCACCCCTATGGTGTTCTGTGGCCTGTTTCCTGTTGACGCTGACCAATTTCCTGAGCTACGTGATGCACTTGACAAGCTACAACTCAATGATGCTGCACTGAAGTATGAACCTGAGACCTCAAGTGCTATGGGATTTGGCTTTAGATGTGGGTTTTTGGGTCTTCTCCACATGGAAATTGTTCAGGAAAGACTTGAGAGAGAATACAATTTGAACCTGATAACTACTGCTCCAAGTGTTGTATACAGAGTGAACTGTATTAATGGTGATACTGTTGAATGCTCAAATCCATCTGTACTTCCTGAGCCTGGAAGCAGGAAATCAATTGAGGAGCCAGTTGTTAAGATTGAGCTGCTTACACCAAAGGACTACATTGGCTCACTTATGGAACTGGCACAAGAAAGAAGAGGGAAGTTCAAAGAAATGAAATTTATCACCGAAAATAGGGCATCAATCACCTATGAATTACCACTAGCTGAGATGGTTGGTGATTTCTTTGACCAGTTAAAGTCAAGAAGTAAGGGTTACGCTAGTATGGAGTATACCTTTATCGGGTACAACGAAAGTGATTTAGTTAAACTTGACATACTGATAAATGGTGATATCGTGGAGCCATTGGCTACAATTGTCCATAAAGATAAGTCATATCATGTGGGAAGGGCTTTGACTCTAAAATTGAAGGAGCTCATACCACGGCAAATGTTTAAAGTACCAATTCAAGCATGCATAGGATCAAAAGTGATTGCTAGTGAAGCTTTATCTGCAATAAGGAAGGATGTATTAGCCAAATGCTACGGTGGAGACATTACGAGAAAAAAGAAATTGCTTAAGAAACAGGCTGAAGGAAAGAAAAGGATGAAGTCTATTGGTAAAGTTGATGTGCCTCAAGAAGCTTTTATGGCAGTTTTGAAACTTGAAAAGGAAGTAATATGA 2106 0.4274 MLVFSSFPSPLCVGGLNQMATEICGGSLFLSVKAQLQLQLPQLFLHSQRTTTTTRFTSSKPRSLNAPSTFHRRGSSVFCQVASLSDFESAAKAGDDRLSKVPVSNIRNFSIIAHIDHGKSTLADKLLQVTGTVHQREMKEQFLDNMDLERERGITIKLQAARMRYVFGNEAYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPERVIKEIEEIVGLDCSNAILCSAKEGIGIIDILNAIVARVPPPADTSKRPLRALIFDSYYDPYRGVIVYFRVVDGTIKKGDRIHFMASGKDYFADEIGVLSPNQLQAKELYAGEVGYLSASIRTVADARVGDTITHYARKADNSLPGYEEATPMVFCGLFPVDADQFPELRDALDKLQLNDAALKYEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLNLITTAPSVVYRVNCINGDTVECSNPSVLPEPGSRKSIEEPVVKIELLTPKDYIGSLMELAQERRGKFKEMKFITENRASITYELPLAEMVGDFFDQLKSRSKGYASMEYTFIGYNESDLVKLDILINGDIVEPLATIVHKDKSYHVGRALTLKLKELIPRQMFKVPIQACIGSKVIASEALSAIRKDVLAKCYGGDITRKKKLLKKQAEGKKRMKSIGKVDVPQEAFMAVLKLEKEVI* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4416 701 TIGRFAM lepA: elongation factor 4 105 696 IPR006297 GO:0005525
Lja1g4416 701 Pfam Elongation factor Tu domain 2 306 376 IPR004161 GO:0005525
Lja1g4416 701 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 302 IPR027417 -
Lja1g4416 701 SUPERFAMILY EF-G C-terminal domain-like 393 471 IPR035647 -
Lja1g4416 701 PRINTS GTP-binding elongation factor signature 151 159 IPR000795 GO:0003924|GO:0005525
Lja1g4416 701 PRINTS GTP-binding elongation factor signature 108 121 IPR000795 GO:0003924|GO:0005525
Lja1g4416 701 PRINTS GTP-binding elongation factor signature 191 202 IPR000795 GO:0003924|GO:0005525
Lja1g4416 701 PRINTS GTP-binding elongation factor signature 175 185 IPR000795 GO:0003924|GO:0005525
Lja1g4416 701 PRINTS GTP-binding elongation factor signature 227 236 IPR000795 GO:0003924|GO:0005525
Lja1g4416 701 Gene3D Elongation Factor G (Translational Gtpase), domain 3 387 468 - -
Lja1g4416 701 Pfam Elongation factor Tu GTP binding domain 105 282 IPR000795 GO:0003924|GO:0005525
Lja1g4416 701 Hamap Translation factor GUF1 homolog, organellar chromatophore [lepA]. 98 698 IPR027518 -
Lja1g4416 701 Hamap Elongation factor 4 [lepA]. 101 699 IPR006297 GO:0005525
Lja1g4416 701 Gene3D Translation factors 287 386 - -
Lja1g4416 701 PANTHER TRANSLATION FACTOR GUF1, MITOCHONDRIAL 93 695 - -
Lja1g4416 701 Gene3D - 581 655 IPR038363 -
Lja1g4416 701 CDD lepA_C 502 581 IPR035654 -
Lja1g4416 701 Gene3D - 469 580 - -
Lja1g4416 701 PANTHER TRANSLATION FACTOR GUF1-RELATED 93 695 IPR006297 GO:0005525
Lja1g4416 701 SUPERFAMILY EF-G C-terminal domain-like 500 594 IPR035647 -
Lja1g4416 701 SUPERFAMILY Translation proteins 266 388 IPR009000 -
Lja1g4416 701 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 144 159 IPR031157 -
Lja1g4416 701 SMART EFG_C_a 499 587 IPR000640 -
Lja1g4416 701 CDD EF4_II 292 377 - -
Lja1g4416 701 CDD LepA 107 284 - -
Lja1g4416 701 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 104 285 IPR000795 GO:0003924|GO:0005525
Lja1g4416 701 CDD EF4_III 394 469 - -
Lja1g4416 701 Pfam Elongation factor G C-terminus 500 587 IPR000640 -
Lja1g4416 701 Pfam GTP-binding protein LepA C-terminus 589 695 IPR013842 -
Lja1g4416 701 Gene3D - 103 286 IPR027417 -
Lja1g4416 701 TIGRFAM small_GTP: small GTP-binding protein domain 107 276 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4416 Lja-Chr1 57294062 57304746 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4416 106 316 Eukaryotic Initiation Factors Gene Family AT3G22980 35.714 2.08e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4416 K21594 - gmx:100809693 1164.83