Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4407 ATGAAGAGGAAATCATCACTTTCACTTGGGCTATTCTTCTTGCTCCTCATTGCCTTTGCTTCTCGGGTCGTGCAAACAGAGGCTAGGGTGTGTCAATCACAGAGCCACAGGTTCAGGGGTGGATGCTGGGGTGACCACAACTGTGCGCTAGTATGCAGGAACGAAGGTTTCTCCGGCGGCAGATGCCGTGGCTTCCGCCGCCGCTGCTTCTGCACCAGGCTTTGTAACTGA 231 0.5455 MKRKSSLSLGLFFLLLIAFASRVVQTEARVCQSQSHRFRGGCWGDHNCALVCRNEGFSGGRCRGFRRRCFCTRLCN* 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4407 76 Pfam Gamma-thionin family 29 75 - -
Lja1g4407 76 PANTHER DEFENSIN-LIKE PROTEIN 1 5 75 - -
Lja1g4407 76 PANTHER DEFENSIN-LIKE PROTEIN 5 75 - -
Lja1g4407 76 SMART gth_4 30 75 IPR003614 GO:0006952
Lja1g4407 76 Gene3D - 29 75 IPR036574 -
Lja1g4407 76 ProSitePatterns Gamma-thionins family signature. 29 52 IPR008176 GO:0006952
Lja1g4407 76 PRINTS Purothionin signature 60 74 IPR008176 GO:0006952
Lja1g4407 76 PRINTS Purothionin signature 30 45 IPR008176 GO:0006952
Lja1g4407 76 SUPERFAMILY Scorpion toxin-like 29 75 IPR036574 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4407 Lja-Chr1 57193111 57193479 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4407 12 75 Plant Defensins Gene Families AT5G63660 64.615 4.11e-26 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4407 - - lja:Lj0g3v0276939.1 103.99