Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4406 ATGGACAAGGCACGGTTCGGGCTTTTCTTCGTGTTGTTCATTCTCCTTGCTTCTCATCAGATGGTGGTGCAAACAGAGGGAAGGCATTGCGAGTCAAAGAGCCACCGGTTCCACGGGTTGTGCCTGAGCCACCATAACTGCGCTTCGGTTTGCCATCTTGAAGGTTTCACCGGTGGTAAGTGCCGCGGATTCCGTAAACGCTGCTTCTGCAAGAAGCGCTGTTAA 225 0.5289 MDKARFGLFFVLFILLASHQMVVQTEGRHCESKSHRFHGLCLSHHNCASVCHLEGFTGGKCRGFRKRCFCKKRC* 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4406 74 PRINTS Purothionin signature 29 44 IPR008176 GO:0006952
Lja1g4406 74 PRINTS Purothionin signature 59 73 IPR008176 GO:0006952
Lja1g4406 74 SMART gth_4 29 74 IPR003614 GO:0006952
Lja1g4406 74 Gene3D - 28 74 IPR036574 -
Lja1g4406 74 PANTHER DEFENSIN 1 74 - -
Lja1g4406 74 SUPERFAMILY Scorpion toxin-like 28 74 IPR036574 -
Lja1g4406 74 Pfam Gamma-thionin family 28 74 - -
Lja1g4406 74 ProSitePatterns Gamma-thionins family signature. 28 51 IPR008176 GO:0006952
Lja1g4406 74 CDD Knot1 39 70 IPR003614 GO:0006952
Lja1g4406 74 PANTHER DEFENSIN-LIKE PROTEIN 1 1 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4406 Lja-Chr1 57177068 57177809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4406 8 74 Plant Defensins Gene Families AT2G02130 61.194 2.23e-23 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4406 - - gmx:100788332 97.4413