Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4405 ATGGGTAGATCTCCTTGCTGCGAGAAAGAACACACCAACAAAGGAGCTTGGACCAAAGAAGAAGATGAACGCCTCGTCAACTACATCAAGCTTCACGGTGAAGGTTGCTGGAGATCTCTTCCAAAAGCTGCTGGGTTGCTTAGATGTGGCAAGAGTTGCAGACTCAGATGGATAAATTACCTCAGACCTGATCTTAAAAGAGGAAACTTCACTGAAGAAGAAGATGAACTTATCATCAGCCTCCACAGCTTACTTGGAAACAAATGGTCTCTAATAGCTGCAAGGCTACCGGGAAGAACCGATAACGAGATCAAGAACTACTGGAACACACACATCAAGAGAAAGCTCTATAGCCGCGGAATCGACCCACAAACCCATCGAACAATCAACGCTTCATCAGCCGCCGCTACAGCCACTACCACCACAGTTCCATCATCAGCTAATGTTGCAGACCCTCTTAAACTAACTACCATCACCAACAAGAACATGAAAAACGACAGCAGCACCAACATCATCATCAGCAACAACAATGATAATAACATTACCAACAACATCAGTTTTCAGTTAGTAAAGATTGGAAACGATACAGTTCACGAAGATTCAAACAGCAGCAGCGGTGTTACAATAGAAGAAGCCTCCCCTCATCATCATCAACAACTCAACTTGGAACTTTCCATTGGCCTTCCCTCTCATCAATATCAGAACCAGTTAGCTTCTTCTTCTTCCGTGAAGTTGAAACATGAGCAACAAGAAGAACCACCACGTATTAATTTGTATCAACAGTGGTGTGGGAACGTTAGTCAAGGTGCGTGCGTGTGTTACGGTCTAGGGTTTCAAACCAACCAAGCGTGTTGCTGCAGAGCCATGGCTACTGCTGCTGCTACAACAGTTACAAAAGCTGCCAATGAAGATGATATCTTTAGATTTTACAGACCCATGAATGTTTAG 948 0.4399 MGRSPCCEKEHTNKGAWTKEEDERLVNYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIISLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRTINASSAAATATTTTVPSSANVADPLKLTTITNKNMKNDSSTNIIISNNNDNNITNNISFQLVKIGNDTVHEDSNSSSGVTIEEASPHHHQQLNLELSIGLPSHQYQNQLASSSSVKLKHEQQEEPPRINLYQQWCGNVSQGACVCYGLGFQTNQACCCRAMATAAATTVTKAANEDDIFRFYRPMNV* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4405 315 Gene3D - 14 66 - -
Lja1g4405 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja1g4405 315 SMART sant 13 63 IPR001005 -
Lja1g4405 315 SMART sant 66 114 IPR001005 -
Lja1g4405 315 CDD SANT 69 112 IPR001005 -
Lja1g4405 315 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 256 - -
Lja1g4405 315 CDD SANT 16 61 IPR001005 -
Lja1g4405 315 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja1g4405 315 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lja1g4405 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja1g4405 315 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja1g4405 315 Gene3D - 68 139 - -
Lja1g4405 315 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Lja1g4405 315 MobiDBLite consensus disorder prediction 198 218 - -
Lja1g4405 315 Coils Coil 315 315 - -
Lja1g4405 315 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja1g4405 315 PANTHER TRANSCRIPTION FACTOR MYB7 1 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4405 Lja-Chr1 57158857 57160721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4405 1 229 MYB Transcription Factor Family AT4G38620 62.338 2.71e-90 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja1g4405 Myb_DNA-binding 6.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4405 K09422 - gmx:100808083 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4405 1 57158857 57160721 Lja1g4405 1 57158857 57160721 ECH
Lja4g0533 4 4367779 4369178 Lja1g4405 1 57158857 57160721 PCT