Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4402 ATGGGAAGAACAAGGTGCTTCTTGGACATCAGCATAGGTGAAGAGCTTGAAGGAAGGATATTGGTGGAGCTTTTCAACGATGTTGTACCCAAAACTTGTGAGAATTTCAGAGCTCTCTGCACTGGAGAAAAAGGCATTGGTCCAAACACTGGTGTGCCTCTCCATTTCAAGGGATCTTGCTTTCATCGTGTTATTAAAGGCTTTATGATCCAAGGAGGCGATATATCTGCTGGAGATGGTACAGGAGGAGAATCTATATATGGACTTAAGTTTGAAGATGAAAATTTTGAGATGAAGCATGAAAGGAAAGGGATGTTATCAATGGCAAACTCTGGTCCTGATACAAATGGGTCTCAATTTTTTATTAGCACTAACCGAACGTCTCATCTAGATGGTAAGCATGTTGTGTTTGGGAAAATAGTCAAAGGAATGGGAGTGGTCCGTTCAATTGAGCATGTTACGATCGATGGAGACCGTCCCGTTGTTGATGTTAAAATTGTGGATTGTGGAGAAATTCCTGACGGAGAAGATGATGGGACATCTAACTTTTTCAAAGATGGTGATACTTATCCTGATTGGCCAGCAGACCTTGATGAGAGCCCTGATGAACTGGACTGGTGGATGAAATCTGTTGACTCAATTAAATCTTTTGGCAATGAGCATTTCAAGAAACAAGACTACAAAATGGCTCTAAGGAAGTATCGTAAGGCTTTACGCTACCTGGATATTTGTTGGGAGAAAGACGACATTGATGAAGAGAAAAGTTCGAGTATGAGGAAAACTAAGTCTCAGGTTTTTACAAACAGCTCTGCTTGTAAGTTGAAATTGGGAGATCTTAAAGGAGCATTATTGGATACAGAATTTGCAATCCGTGACGGAGACAACAATGCCAAAGCTTTGTTCCGGCAAGGGCAGACATACATGGCACTCCATGACATTGATGCTGCAGTTGAAAGCTTTAAGAAGGCACTAACCTTGGAGCCTAATGATGTTGGAATAAAAAAGGAACTCGCTGCTGTTAGGAAGAAGATATCTGATAGACGCGATCTAGAGAAAAAAGCATTTAGCAAGATGTTCCAATAG 1083 0.4109 MGRTRCFLDISIGEELEGRILVELFNDVVPKTCENFRALCTGEKGIGPNTGVPLHFKGSCFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFEMKHERKGMLSMANSGPDTNGSQFFISTNRTSHLDGKHVVFGKIVKGMGVVRSIEHVTIDGDRPVVDVKIVDCGEIPDGEDDGTSNFFKDGDTYPDWPADLDESPDELDWWMKSVDSIKSFGNEHFKKQDYKMALRKYRKALRYLDICWEKDDIDEEKSSSMRKTKSQVFTNSSACKLKLGDLKGALLDTEFAIRDGDNNAKALFRQGQTYMALHDIDAAVESFKKALTLEPNDVGIKKELAAVRKKISDRRDLEKKAFSKMFQ* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4402 360 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP40 1 360 - -
Lja1g4402 360 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755|GO:0006457
Lja1g4402 360 ProSiteProfiles TPR repeat region circular profile. 297 330 - -
Lja1g4402 360 SMART tpr_5 297 330 IPR019734 GO:0005515
Lja1g4402 360 SMART tpr_5 211 244 IPR019734 GO:0005515
Lja1g4402 360 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 171 IPR002130 GO:0000413|GO:0003755
Lja1g4402 360 Gene3D Tetratricopeptide repeat domain 211 360 IPR011990 GO:0005515
Lja1g4402 360 Gene3D - 1 178 IPR029000 -
Lja1g4402 360 SUPERFAMILY TPR-like 208 355 IPR011990 GO:0005515
Lja1g4402 360 CDD cyclophilin_ABH_like 5 170 - -
Lja1g4402 360 Pfam Tetratricopeptide repeat 297 330 IPR001440 GO:0005515
Lja1g4402 360 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Lja1g4402 360 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Lja1g4402 360 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Lja1g4402 360 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Lja1g4402 360 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Lja1g4402 360 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 170 IPR002130 GO:0000413|GO:0003755
Lja1g4402 360 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 360 - -
Lja1g4402 360 SUPERFAMILY Cyclophilin-like 3 177 IPR029000 -
Lja1g4402 360 ProSiteProfiles TPR repeat profile. 297 330 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4402 Lja-Chr1 57091522 57095855 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4402 14 169 U-box Gene Family AT5G67530 44.304 1.30e-36 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4402 K05864 - gmx:100804110 655.981