Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4395 ATGTCCAAACCCACCACCACAGCACCACCAAAACCCACGACGGTCCTCCCCTACCTCACCGAAAACATCCGTGAAGTCTACACCTTCGGAAGAAAGCTCGGCCAGGGTCAATTCGGCACCACATATCTCTGCAGACACAACTCCACAGGCTGCACCTTCGCCTGCAAGTCAATCCCGAAGCGGAAGCTGCTCTGCAAGGAGGATTACGATGATGTTTGGAGGGAGATTCAGATAATGCACCACCTATCGGAGCACCCACACGTTGTCAGGATCCATGGGACTTACGAGGATGCTGCTTCTGTTCACATCGTTATGGAAATCTGTGAAGGGGGTGAGCTTTTTGATAGGATCGTGCAGAAGGGGCAATACAGTGAGAGAGAGGCGGCGAAGTTGATTAGGACTATTGTTGAGGTTGTGGAGGCTTGTCATTCTCTTGGGGTTATGCATAGAGACCTTAAGCCTGAGAATTTCTTGTTTGATACTGTTGAGGAAGATGCTAAGCTGAAGACAACTGATTTTGGGTTGTCTGTGTTTTACAAGCCAGGTGAAACCTTTGGTGATGTTGTTGGAAGCCCATACTATGTTGCACCAGAGGTCTTGCGCAAGCATTATGGACCTGAAATAGATGTGTGGAGTGCCGGTGTTATTTTGTACATCTTATTAAGCGGGGTGCCACCATTTTGGGCTGAAACGGAGCAGGGGATCTTCCGACAGATATTGATGGGAAGACTTGATTTCCAGTCTGAGCCATGGCCCAGCATTTCAGACAGTGCCAAGGATCTAATTCGAAAAATGCTTGATCGGAATCCAAAAACAAGGCTTACAGCTCACCAAGTACTCTGCCACCCATGGATTGTTGATGACAACATTGCACCTGATAAGCCTCTAGATTCTGCTGTTTTGTCACGGCTGAAGCAGTTCTCTGCAATGAATAAACTTAAAAAGATGGCTTTGCGTGTTATTGCAGAGAGTCTCTCTGAGGAAGAAATTGGTGGTCTGAAGGAGTTATTCAAGATGATTGATGCAGACAACAGTGGAACTATAACATTTGATGAGCTAAAAGAAGGCTTAAAGCGAGTAGGATCTGAACTTATGGAGTCTGAAATCAAGGATCTTATGGACGCAGCTGATATTGATAATAGTGGGACAATTGACTATGGTGAGTTCATTGCTGCTACAGTCCACTTAAATAAGCTGGAAAGAGAGGAGAATCTGTTGTCAGCTTTCTCCTATTTTGACAAAGATGGAAGTGGATACATAACCATTGATGAGATACAAGAAGCTTGTAAGGAATTTGGTTTGGATGATATCCATATTGATGATATGGTCAAAGAAATTGATCAAGATAATGATGGACAAATAGATTACGGTGAATTTGCTGCTATGATGAGAAAGGGTAATATTGGAGGGATCGGTAGGCGAACCATGAGAAGCACGCTCAATTTCAGAGATGCTCTGGGAATCACAAGCAATGTGTCCATTTAA 1485 0.4458 MSKPTTTAPPKPTTVLPYLTENIREVYTFGRKLGQGQFGTTYLCRHNSTGCTFACKSIPKRKLLCKEDYDDVWREIQIMHHLSEHPHVVRIHGTYEDAASVHIVMEICEGGELFDRIVQKGQYSEREAAKLIRTIVEVVEACHSLGVMHRDLKPENFLFDTVEEDAKLKTTDFGLSVFYKPGETFGDVVGSPYYVAPEVLRKHYGPEIDVWSAGVILYILLSGVPPFWAETEQGIFRQILMGRLDFQSEPWPSISDSAKDLIRKMLDRNPKTRLTAHQVLCHPWIVDDNIAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAESLSEEEIGGLKELFKMIDADNSGTITFDELKEGLKRVGSELMESEIKDLMDAADIDNSGTIDYGEFIAATVHLNKLEREENLLSAFSYFDKDGSGYITIDEIQEACKEFGLDDIHIDDMVKEIDQDNDGQIDYGEFAAMMRKGNIGGIGRRTMRSTLNFRDALGITSNVSI* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4395 494 ProSiteProfiles EF-hand calcium-binding domain profile. 400 435 IPR002048 GO:0005509
Lja1g4395 494 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4395 494 SUPERFAMILY Protein kinase-like (PK-like) 13 305 IPR011009 -
Lja1g4395 494 ProSitePatterns EF-hand calcium-binding domain. 341 353 IPR018247 -
Lja1g4395 494 SMART efh_1 404 432 IPR002048 GO:0005509
Lja1g4395 494 SMART efh_1 332 360 IPR002048 GO:0005509
Lja1g4395 494 SMART efh_1 438 466 IPR002048 GO:0005509
Lja1g4395 494 SMART efh_1 368 396 IPR002048 GO:0005509
Lja1g4395 494 SUPERFAMILY EF-hand 325 464 IPR011992 -
Lja1g4395 494 Pfam EF-hand domain pair 333 393 IPR002048 GO:0005509
Lja1g4395 494 Pfam EF-hand domain pair 403 464 IPR002048 GO:0005509
Lja1g4395 494 Gene3D - 398 493 - -
Lja1g4395 494 Gene3D - 326 397 - -
Lja1g4395 494 ProSiteProfiles EF-hand calcium-binding domain profile. 364 399 IPR002048 GO:0005509
Lja1g4395 494 SMART serkin_6 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4395 494 Gene3D Phosphorylase Kinase; domain 1 29 113 - -
Lja1g4395 494 ProSitePatterns Protein kinases ATP-binding region signature. 33 56 IPR017441 GO:0005524
Lja1g4395 494 CDD STKc_CAMK 26 284 - -
Lja1g4395 494 PANTHER SERINE/THREONINE-PROTEIN KINASE 7 476 - -
Lja1g4395 494 ProSiteProfiles EF-hand calcium-binding domain profile. 328 363 IPR002048 GO:0005509
Lja1g4395 494 ProSitePatterns EF-hand calcium-binding domain. 413 425 IPR018247 -
Lja1g4395 494 PANTHER CDPK-RELATED KINASE 7 476 - -
Lja1g4395 494 ProSitePatterns EF-hand calcium-binding domain. 447 459 IPR018247 -
Lja1g4395 494 ProSiteProfiles EF-hand calcium-binding domain profile. 438 469 IPR002048 GO:0005509
Lja1g4395 494 CDD EFh 333 392 IPR002048 GO:0005509
Lja1g4395 494 Gene3D Transferase(Phosphotransferase) domain 1 114 325 - -
Lja1g4395 494 Pfam Protein kinase domain 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4395 494 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Lja1g4395 494 ProSitePatterns EF-hand calcium-binding domain. 377 389 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4395 Lja-Chr1 56936946 56941377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4395 5 488 EF-hand Containing Proteins AT1G35670 77.664 0.0 791
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lja1g4395 Pkinase 2.6e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4395 K13412 - gmx:100790443 915.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4395 1 56936946 56941377 Lja1g4395 1 56936946 56941377 ECH