Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4375 ATGGAAGACTTAGAAATTCCGAATTGGTGTTCAGATGAAGGTTCTTCATCAAATGGGGAAGGAAAAAATGTTGCCGGAGATCTATCATCTACCACACCTACCTTGTCTGAATCAATTGGTGAGGAAGAAGCGGGTTATGCTTTCAATAGTATGGATGATGCTGCAAACATTGTGTGGGATAGTATTAATGAGACTAACTTCAAGAAGTACCATTTTTTGAATCGGCAAGTTGTATTTGAGTTCTACAACTTGTATGCTAGGATAAAGGGATTCTCAATACGGAAGAGCAAGGTGGTGAGAAACAAGCATGGGGAAATTGTGAGGCAAGACTTAGTGTGTCACAAGGAAGGCTTTCGTGAAGAGAAAAATCGAATGAGGGCCAATCGGAAGTGGGAAACAAAGGTAGAGACAAGGTGCGGGTGCTGTGCAAAATTGAGGGTTCGTTTGGATGTGGAAAGTGGTAGGTGGCATGTGGTATTATTTGGAGATGATCACAACCATGCAATGTTAGAGGGGAAGCAATCATCAATGTTACCAGCTCATCGGCATATGAAAGATGGTGATATAGTGGGAATGAACAGCATGCGAAAAGCTGGTATTAGCACAACTGAGATATACAATTTATTTGCTGATCAATCCGGGGGTTTTGATAAAAACAATTTTCAAAAGGTAGATATGCTTAATCAAATGACGAAGCAGAAACAGAAGAAGCAGTGTGATGCCAAAGCTGTTCTAGTTAATGTTGACACCGGCAATAAGGAGTTTGATAATATTAAAAATCCTACTGCAGTTAGGAGCAAGGGATGTGGCGGTTCACAAACTGGGAACAAGACAGGCAAAAGAAAGTGCAGTATTTGTAAGAATGAAGGTCACAACAAGATAACATGCCCCCAGAACAAAAGGGTAAAAGTTGCAGCATGTGGTGAACCTTCTAATGTGGGTCATGATGATGATGGAGCAGGTGATTAG 969 0.4107 MEDLEIPNWCSDEGSSSNGEGKNVAGDLSSTTPTLSESIGEEEAGYAFNSMDDAANIVWDSINETNFKKYHFLNRQVVFEFYNLYARIKGFSIRKSKVVRNKHGEIVRQDLVCHKEGFREEKNRMRANRKWETKVETRCGCCAKLRVRLDVESGRWHVVLFGDDHNHAMLEGKQSSMLPAHRHMKDGDIVGMNSMRKAGISTTEIYNLFADQSGGFDKNNFQKVDMLNQMTKQKQKKQCDAKAVLVNVDTGNKEFDNIKNPTAVRSKGCGGSQTGNKTGKRKCSICKNEGHNKITCPQNKRVKVAACGEPSNVGHDDDGAGD* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4375 322 MobiDBLite consensus disorder prediction 10 36 - -
Lja1g4375 322 Pfam FAR1 DNA-binding domain 80 170 IPR004330 -
Lja1g4375 322 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 47 239 - -
Lja1g4375 322 MobiDBLite consensus disorder prediction 1 36 - -
Lja1g4375 322 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 47 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4375 Lja-Chr1 56550746 56553175 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja1g4375 FAR1 9.6e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4375 - - mtr:MTR_1g070355 182.956