Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4372 ATGGATAGAAGGACACGTTCTTCTGAAGAAGATGAAAATTTGTTTCCAATATATTCTGAAAGGTCCCTGCAAGACATGTCGGCCATGGTTTCAGCTCTCACGCAAGTCATTGGTGGCGGCACCACCAACAATAACCCACTTCAAATGCATGAACAAGCTTTAACCACGTCTCATTCCAGCTCAACCCAGAATGAACCATTCCAACAACCACAGCAAGATCAAGGTAATAGTGTTAGGAGAAGACACTATAGAGGAGTGAGGCAGCGGCCATGGGGCAAATGGGCTGCAGAGATTCGCGATCCGCAGAAGGCGGCTAGGGTGTGGCTTGGAACTTTTGAAACTGCTGAGGCTGCTGCACTTGCCTATGATGAAGCTGCTCTCAGATTCAAAGGAAGCAAAGCAAAGCTCAACTTTCCTGAAAGAGTTCAAGGCACAGCAGAGTTTGCTGGCTTCCTCACAAATCAACAACAATTTCATCATACAGTGTCAAGCAATAGTAGTAATGAACAAGCGTCTAATAACCATGTTGAGCCTCTTCCACACTTTTCTCAAGAAGCAGCTGCATATTCAAGTCCCTTTCAATTTCAGGGAAGTGGGAGTGGAAACTTCAATTTCTATGGGTCTCAGCCCTTAACTCCGCAGCAGCAAGAGTTTCTGAGATTGTCCATGCAGTATGGAGGTTCGTCTTCTTCTGCTGCTTCTGAGCCTCATAGGAATTGGAGGGATGACATGGATGGTAGCCATTAA 747 0.4592 MDRRTRSSEEDENLFPIYSERSLQDMSAMVSALTQVIGGGTTNNNPLQMHEQALTTSHSSSTQNEPFQQPQQDQGNSVRRRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDEAALRFKGSKAKLNFPERVQGTAEFAGFLTNQQQFHHTVSSNSSNEQASNNHVEPLPHFSQEAAAYSSPFQFQGSGSGNFNFYGSQPLTPQQQEFLRLSMQYGGSSSSAASEPHRNWRDDMDGSH* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4372 248 SMART rav1_2 82 145 IPR001471 GO:0003700|GO:0006355
Lja1g4372 248 CDD AP2 82 140 IPR001471 GO:0003700|GO:0006355
Lja1g4372 248 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Lja1g4372 248 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Lja1g4372 248 ProSiteProfiles AP2/ERF domain profile. 82 139 IPR001471 GO:0003700|GO:0006355
Lja1g4372 248 MobiDBLite consensus disorder prediction 52 76 - -
Lja1g4372 248 Pfam AP2 domain 82 131 IPR001471 GO:0003700|GO:0006355
Lja1g4372 248 MobiDBLite consensus disorder prediction 216 248 - -
Lja1g4372 248 MobiDBLite consensus disorder prediction 52 86 - -
Lja1g4372 248 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 11 174 - -
Lja1g4372 248 Gene3D AP2/ERF domain 81 141 IPR036955 GO:0003700|GO:0006355
Lja1g4372 248 PANTHER DNA-BINDING DOMAIN 11 174 IPR044808 GO:0003700|GO:0009873
Lja1g4372 248 MobiDBLite consensus disorder prediction 216 235 - -
Lja1g4372 248 SUPERFAMILY DNA-binding domain 82 140 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4372 Lja-Chr1 56506757 56508198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4372 13 155 AP2-EREBP Transcription Factor Family AT5G61890 61.111 3.00e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja1g4372 AP2 2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4372 - - gmx:100787091 217.238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4372 1 56506757 56508198 Lja4g0503 4 4110477 4111860 ECH
Lja1g1677 1 18513130 18515367 Lja1g4372 1 56506757 56508198 ECH
Lja4g0503 4 4110477 4111860 Lja1g4372 1 56506757 56508198 ECH
Lja1g4372 1 56506757 56508198 Lja1g4372 1 56506757 56508198 ECH
Lja4g0503 4 4110477 4111860 Lja1g4372 1 56506757 56508198 PCT