Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4369 ATGCCTTCTGAAATTATGGACCAGAGGGGTGTAACTGCCTCGTCTCACATGTTCGACGATGTTTCCTATGCTGCTGAGAGGAATGTTGGTTTGCGGAAGCCAAAATCCATTCATGACCATTATCCACAAGGAAGGAGTGAAATGGCAGCATTGCCTGGCAGTATTTTGAATGCTCCATCACCCCTCGAAACAAAAGCAGAAGCAGGCTTGCCGATGACACAGACTAGTCGGTCTGGTGAAATATCACAAAATCTACATTTTGGTAGAGAAGCTGGCATTATGGATGTGCTGAAGGATTCCAAGGAATCTATGAATTATCATGCAAGATCGTTTGATGTGCGTAGGCAGCCGGCGTCTAGCTCATATGGTTTAATTGGAAACAAGATTGTCACCAATGCTGGCTCACGTGAAAGCAGTCTATTCTCAAGTTCACTTTCTGACATATTTAGCCAGAAGTTGCGGTTAATGGGGAATGGTGTTCTGTCTGATCAGCACATTACTGTCGGTTCCCTGCCTGAGGAAGAACCATTTAAATCTCTTGAAGAAATTGAGGCTGACACTATAGGGAATCTCCTTCCTGATGAAGCTGATCTGTTTTCTGGTGTCACTGATGACTGGGGAAGCAGTGCTCATGCTAGAACAACTGATGACTTTGAAGATTTTGATTTGTTCAGCAGTGGTGGAGGCATGGAGTTGGAAGGAGATGAGCATCTAGTTTCAGGAAAAAGAACCAGTTACGTGGACGGAGATCCTGGTTACTTTGGGGCTTCTAAAGGAAAAAATCCTTTTGGTGAACAATATTCGAGAACACTTTTTGTTAGAAACATCAATAGCAATGTAGAAGACTCTGAGCTAAAGGCTCTCTTTGAGCTATATGGAGACATTCGAACCATTTATACTGCCTGCAAGCATCGTGGTTTTGTCATCATTTCATATTATGATTTAAGGGCAGCACAAAATGCAATGAAAGCACTTCAAAATAGGTCTTTGAGATCTAGGAAACTAGATATACATTATTCAATCCCAAAGGGAAATGCTCCAGAAAAGGATATTGGCCATGGTATGCTGATGATATCTGGTCTTGATTCATCTGTTTCTAATGATGAGCTTAAATATATTTTTGGCTTTTATGGAGAAATTAAAGAAATCTATGATTATCCAGAAATGAATTACATCAAATCTGTTGAGTTTTATGATGTCCGAGGTGCAGTAGCCTCTCTTCGTGCATTGAATGGGATCTGCATTGCTGGGAAGCACATCAAGCTTGAACCTGGCCATCCTAGAATGGCAACATGTGTGATGCAGCAGTCTCAGCAGGGGCAAGATGAGTCTGCTCTTGGTCAAAATCTCAATGAAAACTTATTATTAAGGCAGAAAGGAGTGTCTTCTGGTGTTATTGGGTCTGGTGGCTCCTTGGAAAATGGATATAATCAAAGATTTCAACCTGAAACGCAGCTACCTTTGAATGCTTTCATGGATAATGCATTCTTTAATGTGAATTCTACTATTCATAAGACTGCAAGAGGGGCACCTGCTGCAAAACTATCTGGTGTTGAGTCCAGTAACATTGCTGATGCAATGAAATTCCCATCCATTCCTAGACTCCATCCTCATTCATTACCTGAGTATAGTGATAGTTTGGCTAATGGTAGTCCTTACAAATTTTCAAGCGCCATTAACATGGCTGCCAAAATTGGAACTGGATCAGCAGAACTGTCAGACAGCAGGCGCATTCCTGGAATCGGCTCAATTGGGAATCTTCCTGAATTTAATGCAGGAGGAAATGGAAGCCGCCCCCTTCATCAACCTTATCATATGTGGAATGGTTCTAACTTGCACCAGCAGTCTCCATCAAATGCCTTGCTTTGGCAGAAAACACCATCATTTGGTGCTGGTTCTCCATGTCTTCCACAGATGCCCAGTTTTCCCAGGACACCGCCTCATGTGATGAGGGCACCACATGTTGACCACCATGTTGGATCAGCTCCAGTAATTGCGGGCTCACCCTGGGAAAGGCAACACTCTTACTTGGGAGAGTCTCCTGATGCTTCTGGTTTGAGAATGGGTTCTCTAGGAAGTGCAGGTTTTCATGGTAGCTGGCAGTTACATCCTCCAGATTTTTCTGGCAACGTGTTTTCTCATGTTGGTGGGAATGGTAATGAATTGACATCCAATGTTGGGCAAGGCTCTCCTAAGCAGTTGTCACATGTTTTCCCTGGGAGACTTCCTATGACTTCAATGTCAAAATTTGATTCTACCAATGAACGAATGAGAAACCTCTATCATCGTAGAAGTGAAACAAACAATAACAATGCTGATAAAAAACAATATGAACTGGACCTAGGCCGCATATTGCGTGGGGAAGACACCCGGACAACGCTTATGATTAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTGCTGCCATCGATGAGCAATGTCGTGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGAACAAATGTAATGTTGGCTACGCATTCATCAATATGACTGATCCTTGTCAAATAATTCCATTCCACCAGGCTTTTAATGGGAAAAAGTGGGAGAAATTCAACAGTGAAAAGGTAGCTGTACTTGCATATGCCCGAATTCAAGGAAAATCTGCTCTCATTGCTCATTTCCAGAATTCAAGCCTGATGAACGAAGATAAACGATGCCGCCCTATTCTCTTCCATACAGATGGCCCAAATGCTGGTGATCCGGAACCTTTCCCCTTGGGTAGCAATATCCGCGTGAGGCCTGGAAAATCTCGCGCCGGTGGTAATGAGGAGAATCGCGGCCTAGGGAATCCTTCAACCTTGGCAAGTGGAGAGGAATTAGCACTGGACTCTTTCCTGGGTTCTCCAAATGATGCTTACTGA 2898 0.4293 MPSEIMDQRGVTASSHMFDDVSYAAERNVGLRKPKSIHDHYPQGRSEMAALPGSILNAPSPLETKAEAGLPMTQTSRSGEISQNLHFGREAGIMDVLKDSKESMNYHARSFDVRRQPASSSYGLIGNKIVTNAGSRESSLFSSSLSDIFSQKLRLMGNGVLSDQHITVGSLPEEEPFKSLEEIEADTIGNLLPDEADLFSGVTDDWGSSAHARTTDDFEDFDLFSSGGGMELEGDEHLVSGKRTSYVDGDPGYFGASKGKNPFGEQYSRTLFVRNINSNVEDSELKALFELYGDIRTIYTACKHRGFVIISYYDLRAAQNAMKALQNRSLRSRKLDIHYSIPKGNAPEKDIGHGMLMISGLDSSVSNDELKYIFGFYGEIKEIYDYPEMNYIKSVEFYDVRGAVASLRALNGICIAGKHIKLEPGHPRMATCVMQQSQQGQDESALGQNLNENLLLRQKGVSSGVIGSGGSLENGYNQRFQPETQLPLNAFMDNAFFNVNSTIHKTARGAPAAKLSGVESSNIADAMKFPSIPRLHPHSLPEYSDSLANGSPYKFSSAINMAAKIGTGSAELSDSRRIPGIGSIGNLPEFNAGGNGSRPLHQPYHMWNGSNLHQQSPSNALLWQKTPSFGAGSPCLPQMPSFPRTPPHVMRAPHVDHHVGSAPVIAGSPWERQHSYLGESPDASGLRMGSLGSAGFHGSWQLHPPDFSGNVFSHVGGNGNELTSNVGQGSPKQLSHVFPGRLPMTSMSKFDSTNERMRNLYHRRSETNNNNADKKQYELDLGRILRGEDTRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMTDPCQIIPFHQAFNGKKWEKFNSEKVAVLAYARIQGKSALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGSNIRVRPGKSRAGGNEENRGLGNPSTLASGEELALDSFLGSPNDAY* 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4369 965 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 957 - -
Lja1g4369 965 MobiDBLite consensus disorder prediction 903 965 - -
Lja1g4369 965 CDD RRM1_MEI2_like 268 343 IPR034453 -
Lja1g4369 965 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 957 - -
Lja1g4369 965 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 354 427 IPR000504 GO:0003723
Lja1g4369 965 Pfam RNA recognition motif 2 791 887 IPR007201 -
Lja1g4369 965 Gene3D - 261 352 IPR012677 -
Lja1g4369 965 SUPERFAMILY RNA-binding domain, RBD 793 878 IPR035979 GO:0003676
Lja1g4369 965 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 342 IPR000504 GO:0003723
Lja1g4369 965 SMART rrm1_1 355 423 IPR000504 GO:0003723
Lja1g4369 965 SMART rrm1_1 270 338 IPR000504 GO:0003723
Lja1g4369 965 SMART rrm1_1 793 871 IPR000504 GO:0003723
Lja1g4369 965 Gene3D - 353 449 IPR012677 -
Lja1g4369 965 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 356 421 IPR000504 GO:0003723
Lja1g4369 965 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 335 IPR000504 GO:0003723
Lja1g4369 965 SUPERFAMILY RNA-binding domain, RBD 267 425 IPR035979 GO:0003676
Lja1g4369 965 CDD RRM3_MEI2_like 794 879 IPR034454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4369 Lja-Chr1 56473707 56482216 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4369 264 420 Eukaryotic Initiation Factors Gene Family AT3G16380 24.719 3.75e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4369 - - aprc:113865455 1478.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4369 1 56473707 56482216 Lja1g4369 1 56473707 56482216 ECH