Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja1g4364 | ATGTATTTCACAAAACTCAATGACTCGCCCATGTTCCGACAACAGCTTCAGTCCCTGGAAGAAAGTGCAGAATCGTTGCGCTCGAGATGCTGGAAGTTCTACAAAGGATGTCGAAAGTACACGGAAGGGCTTGGAGTGGCATATGATGAAGATATAGCATTTGCAAGTTCCCTAGAAAATTTTGGAGGAGGGCATAGTGATCCTTTATTTGTAACTTTAGGTGGACCGGTGATGACCAAATTCTCTGTTGCTATGAGAGAAATTAGTACATACAAGGAGCTTCTTCGGTCACAGGTGGAGCACATGCTCAATGACAGGTTACTGAACATTCTAAATGTTGAAATCCTTGATGTCAAGGAAGCTCGGAGGCGTTTTGACAAAGCTTCTCTTGTATATGATCAGGCTCGCGAGAAGTTTATGTCACTGAGAAAAAGCACTAAGCTTGAGATTTCCACTGTCATAGAAGAGGATATGCACAATGCAAGAACGTCATTTGAGGAAGCTCGTTTCAATCTGGTTAGTGCTCTTCATAATGTTGAAGCGAAGAAGCGATTTGAGTTTTTGGAGGCTGTCACTGGAGTTATGGATGCTCATCTTCGATACTTTAAACAGGGATATGAGTTATTAAATGAGTTGGAGCCTTTCATTATCGAGGTTTTGGCTTATGCACAAAAAGCAAGAGAAAGTCACAATGAGGAGCAGATTTCTCTTTGCGAAAGAATGGTGGAGTACAAAAAACTAGTTCATCAAGAAAGTAAGTTGTCCTTGAATGGCCCTTATGGTTCTCCAAGTGGAGAAGGTGTGCATGTGCAGCCTTTTTCCAGGATTTCAAATAAAGTGGTAGATGCAGTAACAGAATCCGCCGCAGATGGAAAGGTTCGAATCATTAGGCAAGGGTATCTCTCCAAACGTTCCTCCAATTTGAGAGGTGACTGGAAGAGAAGGTATTTTGTTCTTGATAGTCACGGAATGCTTTACTACTATCGCAAACCATGGAGTAGTTCACAGAGTGGAAATCAATCATCTTCACAGAGGAATAGTGCTACTGATAATAGTGCTGGGATTCTGAGTCGGTTGCTTTCTTCTTCGCATCACCATGGAGTTGTTCATGATGAAAAATCTGTGGTACGCCATACGGTGAACTTGCTGACATCAACAATCAAGGCTGATGCTGAACAGTCAGATTTAAGGTTCTGCTTCAGGATTATTTCACCATCAAAGGTTTTTACATTACAGGCAGAAAATGCCCTGGACCAGATGGATTGGATGGAACAGATAAATGGAGTAATTGCCTCTTTATTGACACTGGGGAAGTCTTTCCCAACTGACTCGGAAAGTGGTGACTCTGAATCTACCAGCAAGTACGATTCATTACAAAATTCTCCAGTTTATCGAGCTGTCAGCGGAGATTCATCATACAAGGACGTGGCTACTAGTAGACCATCTGAAGACTTGCAGAGGAGTAGGCCGAGTATAAAAATTGAAAAGCCAATGGATGTTCTTAGAAAGGTTAGCGGGAATGACAAATGTGCTGATTGTGGTAAACCTGAACCAGATTGGGCATCCTTAAACCTTGGAATCCTTATATGCATTGAATGCTCTGGTGTTCACCGTAATCTTGGTGTACATCTATCAAAAGTAAGATCACTAACACTTGATGTGAAAATATGGGATTCCTCAGTCTTAGCCTTGTTTCAGTCACTGGGCAATCTCTTTGCAAACTCAGTTTGGGAGGAGCTGTTGCATTCGACAAGTACTTCGCAAACTGATGATACTCCTGATGGTTCATCAAAGGCAAACACAAAAAAGTTATTTCATGCAAGAAAACCAGCACATGATGATCCTATTTCACTAAAGGAGAGGTTCATTTTTGCAAAGTATTCTGAGAAAGTCTTTGTTCGCCGGATGACAAAAAACCACCGTCTCCTTTCAGTGGCACAACAGGTGTGGGAAAGCATCTGCAGCAACGACAAGAAAGCCGTGTATCGACATATTGTCAAATCAGATGTGGATGTCAATGCTATTAGTGGAGAAGCATTACATGGATATTCTTCCAACATGCCTTCTTCAAGTAATTCAGATTCAGAAATATCATCTAAAAGTAAAGATCAACTAATTGGGGACATACAAGAAGGTGCTAGAGTGTTACACCTGGCATGCCTAACAAGCGATGCTGTAATGGTAGAGCTGCTCATACAGTGCGGGGCGGATGTAAATGCTATTGATTCAAGAGGTTGTACACCACTGCATTACTGCATTATGAGAGGGAACAATGCATCTGCAAAAGTGCTTATTTCAAGGGGGGCAAATCCAACAGCGGTTGACAAAGAAGGCAATACTCCTCTTAAGCTTGCATGGGAATCCAGCACTGTTAGCAAAGACATTTTTGCTCTCTTAACAAGCACAAGCAGATAG | 2415 | 0.419 | MYFTKLNDSPMFRQQLQSLEESAESLRSRCWKFYKGCRKYTEGLGVAYDEDIAFASSLENFGGGHSDPLFVTLGGPVMTKFSVAMREISTYKELLRSQVEHMLNDRLLNILNVEILDVKEARRRFDKASLVYDQAREKFMSLRKSTKLEISTVIEEDMHNARTSFEEARFNLVSALHNVEAKKRFEFLEAVTGVMDAHLRYFKQGYELLNELEPFIIEVLAYAQKARESHNEEQISLCERMVEYKKLVHQESKLSLNGPYGSPSGEGVHVQPFSRISNKVVDAVTESAADGKVRIIRQGYLSKRSSNLRGDWKRRYFVLDSHGMLYYYRKPWSSSQSGNQSSSQRNSATDNSAGILSRLLSSSHHHGVVHDEKSVVRHTVNLLTSTIKADAEQSDLRFCFRIISPSKVFTLQAENALDQMDWMEQINGVIASLLTLGKSFPTDSESGDSESTSKYDSLQNSPVYRAVSGDSSYKDVATSRPSEDLQRSRPSIKIEKPMDVLRKVSGNDKCADCGKPEPDWASLNLGILICIECSGVHRNLGVHLSKVRSLTLDVKIWDSSVLALFQSLGNLFANSVWEELLHSTSTSQTDDTPDGSSKANTKKLFHARKPAHDDPISLKERFIFAKYSEKVFVRRMTKNHRLLSVAQQVWESICSNDKKAVYRHIVKSDVDVNAISGEALHGYSSNMPSSSNSDSEISSKSKDQLIGDIQEGARVLHLACLTSDAVMVELLIQCGADVNAIDSRGCTPLHYCIMRGNNASAKVLISRGANPTAVDKEGNTPLKLAWESSTVSKDIFALLTSTSR* | 805 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja1g4364 | 804 | Pfam | BAR domain of APPL family | 6 | 233 | - | - | |
Lja1g4364 | 804 | CDD | BAR_SFC_plant | 15 | 215 | IPR035670 | - | |
Lja1g4364 | 804 | ProSiteProfiles | Ankyrin repeat region circular profile. | 711 | 742 | - | - | |
Lja1g4364 | 804 | ProSiteProfiles | Ankyrin repeat profile. | 744 | 776 | IPR002110 | GO:0005515 | |
Lja1g4364 | 804 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 495 | 635 | IPR037278 | - | |
Lja1g4364 | 804 | SUPERFAMILY | Ankyrin repeat | 667 | 798 | IPR036770 | - | |
Lja1g4364 | 804 | SMART | 5bar | 5 | 218 | IPR004148 | GO:0005515|GO:0005737 | |
Lja1g4364 | 804 | Pfam | PH domain | 296 | 430 | IPR001849 | - | |
Lja1g4364 | 804 | Gene3D | Arf GTPase activating protein | 477 | 637 | IPR038508 | - | |
Lja1g4364 | 804 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 | 1 | 802 | - | - | |
Lja1g4364 | 804 | SMART | PH_update | 295 | 433 | IPR001849 | - | |
Lja1g4364 | 804 | SMART | ANK_2a | 711 | 740 | IPR002110 | GO:0005515 | |
Lja1g4364 | 804 | SMART | ANK_2a | 744 | 773 | IPR002110 | GO:0005515 | |
Lja1g4364 | 804 | Gene3D | - | 638 | 800 | IPR036770 | - | |
Lja1g4364 | 804 | MobiDBLite | consensus disorder prediction | 468 | 489 | - | - | |
Lja1g4364 | 804 | CDD | PH_ACAP | 297 | 435 | - | - | |
Lja1g4364 | 804 | Pfam | Ankyrin repeats (3 copies) | 716 | 799 | IPR002110 | GO:0005515 | |
Lja1g4364 | 804 | CDD | ArfGap | 498 | 627 | - | - | |
Lja1g4364 | 804 | SUPERFAMILY | BAR/IMD domain-like | 6 | 317 | IPR027267 | - | |
Lja1g4364 | 804 | Pfam | Putative GTPase activating protein for Arf | 498 | 629 | IPR001164 | GO:0005096 | |
Lja1g4364 | 804 | Coils | Coil | 118 | 138 | - | - | |
Lja1g4364 | 804 | ProSiteProfiles | PH domain profile. | 294 | 431 | IPR001849 | - | |
Lja1g4364 | 804 | PRINTS | HIV Rev interacting protein signature | 526 | 543 | IPR001164 | GO:0005096 | |
Lja1g4364 | 804 | PRINTS | HIV Rev interacting protein signature | 549 | 570 | IPR001164 | GO:0005096 | |
Lja1g4364 | 804 | PRINTS | HIV Rev interacting protein signature | 507 | 526 | IPR001164 | GO:0005096 | |
Lja1g4364 | 804 | SMART | arf_gap_3 | 495 | 640 | IPR001164 | GO:0005096 | |
Lja1g4364 | 804 | Gene3D | - | 287 | 438 | IPR011993 | - | |
Lja1g4364 | 804 | PANTHER | CENTAURIN/ARF | 1 | 802 | IPR045258 | GO:0005096 | |
Lja1g4364 | 804 | Gene3D | Arfaptin homology (AH) domain/BAR domain | 4 | 249 | IPR027267 | - | |
Lja1g4364 | 804 | ProSiteProfiles | Ankyrin repeat profile. | 711 | 743 | IPR002110 | GO:0005515 | |
Lja1g4364 | 804 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 495 | 640 | IPR001164 | GO:0005096 | |
Lja1g4364 | 804 | SUPERFAMILY | PH domain-like | 204 | 430 | - | - | |
Lja1g4364 | 804 | ProSiteProfiles | Ankyrin repeat region circular profile. | 744 | 776 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja1g4364 | Lja-Chr1 | 56376209 | 56384205 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lja1g4364 | 472 | 634 | C2H2 Transcription Factor Family | AT4G21160 | 36.585 | 8.05e-22 | 95.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lja1g4364 | K12489 | - | gmx:100797073 | 1134.01 |