Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4364 ATGTATTTCACAAAACTCAATGACTCGCCCATGTTCCGACAACAGCTTCAGTCCCTGGAAGAAAGTGCAGAATCGTTGCGCTCGAGATGCTGGAAGTTCTACAAAGGATGTCGAAAGTACACGGAAGGGCTTGGAGTGGCATATGATGAAGATATAGCATTTGCAAGTTCCCTAGAAAATTTTGGAGGAGGGCATAGTGATCCTTTATTTGTAACTTTAGGTGGACCGGTGATGACCAAATTCTCTGTTGCTATGAGAGAAATTAGTACATACAAGGAGCTTCTTCGGTCACAGGTGGAGCACATGCTCAATGACAGGTTACTGAACATTCTAAATGTTGAAATCCTTGATGTCAAGGAAGCTCGGAGGCGTTTTGACAAAGCTTCTCTTGTATATGATCAGGCTCGCGAGAAGTTTATGTCACTGAGAAAAAGCACTAAGCTTGAGATTTCCACTGTCATAGAAGAGGATATGCACAATGCAAGAACGTCATTTGAGGAAGCTCGTTTCAATCTGGTTAGTGCTCTTCATAATGTTGAAGCGAAGAAGCGATTTGAGTTTTTGGAGGCTGTCACTGGAGTTATGGATGCTCATCTTCGATACTTTAAACAGGGATATGAGTTATTAAATGAGTTGGAGCCTTTCATTATCGAGGTTTTGGCTTATGCACAAAAAGCAAGAGAAAGTCACAATGAGGAGCAGATTTCTCTTTGCGAAAGAATGGTGGAGTACAAAAAACTAGTTCATCAAGAAAGTAAGTTGTCCTTGAATGGCCCTTATGGTTCTCCAAGTGGAGAAGGTGTGCATGTGCAGCCTTTTTCCAGGATTTCAAATAAAGTGGTAGATGCAGTAACAGAATCCGCCGCAGATGGAAAGGTTCGAATCATTAGGCAAGGGTATCTCTCCAAACGTTCCTCCAATTTGAGAGGTGACTGGAAGAGAAGGTATTTTGTTCTTGATAGTCACGGAATGCTTTACTACTATCGCAAACCATGGAGTAGTTCACAGAGTGGAAATCAATCATCTTCACAGAGGAATAGTGCTACTGATAATAGTGCTGGGATTCTGAGTCGGTTGCTTTCTTCTTCGCATCACCATGGAGTTGTTCATGATGAAAAATCTGTGGTACGCCATACGGTGAACTTGCTGACATCAACAATCAAGGCTGATGCTGAACAGTCAGATTTAAGGTTCTGCTTCAGGATTATTTCACCATCAAAGGTTTTTACATTACAGGCAGAAAATGCCCTGGACCAGATGGATTGGATGGAACAGATAAATGGAGTAATTGCCTCTTTATTGACACTGGGGAAGTCTTTCCCAACTGACTCGGAAAGTGGTGACTCTGAATCTACCAGCAAGTACGATTCATTACAAAATTCTCCAGTTTATCGAGCTGTCAGCGGAGATTCATCATACAAGGACGTGGCTACTAGTAGACCATCTGAAGACTTGCAGAGGAGTAGGCCGAGTATAAAAATTGAAAAGCCAATGGATGTTCTTAGAAAGGTTAGCGGGAATGACAAATGTGCTGATTGTGGTAAACCTGAACCAGATTGGGCATCCTTAAACCTTGGAATCCTTATATGCATTGAATGCTCTGGTGTTCACCGTAATCTTGGTGTACATCTATCAAAAGTAAGATCACTAACACTTGATGTGAAAATATGGGATTCCTCAGTCTTAGCCTTGTTTCAGTCACTGGGCAATCTCTTTGCAAACTCAGTTTGGGAGGAGCTGTTGCATTCGACAAGTACTTCGCAAACTGATGATACTCCTGATGGTTCATCAAAGGCAAACACAAAAAAGTTATTTCATGCAAGAAAACCAGCACATGATGATCCTATTTCACTAAAGGAGAGGTTCATTTTTGCAAAGTATTCTGAGAAAGTCTTTGTTCGCCGGATGACAAAAAACCACCGTCTCCTTTCAGTGGCACAACAGGTGTGGGAAAGCATCTGCAGCAACGACAAGAAAGCCGTGTATCGACATATTGTCAAATCAGATGTGGATGTCAATGCTATTAGTGGAGAAGCATTACATGGATATTCTTCCAACATGCCTTCTTCAAGTAATTCAGATTCAGAAATATCATCTAAAAGTAAAGATCAACTAATTGGGGACATACAAGAAGGTGCTAGAGTGTTACACCTGGCATGCCTAACAAGCGATGCTGTAATGGTAGAGCTGCTCATACAGTGCGGGGCGGATGTAAATGCTATTGATTCAAGAGGTTGTACACCACTGCATTACTGCATTATGAGAGGGAACAATGCATCTGCAAAAGTGCTTATTTCAAGGGGGGCAAATCCAACAGCGGTTGACAAAGAAGGCAATACTCCTCTTAAGCTTGCATGGGAATCCAGCACTGTTAGCAAAGACATTTTTGCTCTCTTAACAAGCACAAGCAGATAG 2415 0.419 MYFTKLNDSPMFRQQLQSLEESAESLRSRCWKFYKGCRKYTEGLGVAYDEDIAFASSLENFGGGHSDPLFVTLGGPVMTKFSVAMREISTYKELLRSQVEHMLNDRLLNILNVEILDVKEARRRFDKASLVYDQAREKFMSLRKSTKLEISTVIEEDMHNARTSFEEARFNLVSALHNVEAKKRFEFLEAVTGVMDAHLRYFKQGYELLNELEPFIIEVLAYAQKARESHNEEQISLCERMVEYKKLVHQESKLSLNGPYGSPSGEGVHVQPFSRISNKVVDAVTESAADGKVRIIRQGYLSKRSSNLRGDWKRRYFVLDSHGMLYYYRKPWSSSQSGNQSSSQRNSATDNSAGILSRLLSSSHHHGVVHDEKSVVRHTVNLLTSTIKADAEQSDLRFCFRIISPSKVFTLQAENALDQMDWMEQINGVIASLLTLGKSFPTDSESGDSESTSKYDSLQNSPVYRAVSGDSSYKDVATSRPSEDLQRSRPSIKIEKPMDVLRKVSGNDKCADCGKPEPDWASLNLGILICIECSGVHRNLGVHLSKVRSLTLDVKIWDSSVLALFQSLGNLFANSVWEELLHSTSTSQTDDTPDGSSKANTKKLFHARKPAHDDPISLKERFIFAKYSEKVFVRRMTKNHRLLSVAQQVWESICSNDKKAVYRHIVKSDVDVNAISGEALHGYSSNMPSSSNSDSEISSKSKDQLIGDIQEGARVLHLACLTSDAVMVELLIQCGADVNAIDSRGCTPLHYCIMRGNNASAKVLISRGANPTAVDKEGNTPLKLAWESSTVSKDIFALLTSTSR* 805
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4364 804 Pfam BAR domain of APPL family 6 233 - -
Lja1g4364 804 CDD BAR_SFC_plant 15 215 IPR035670 -
Lja1g4364 804 ProSiteProfiles Ankyrin repeat region circular profile. 711 742 - -
Lja1g4364 804 ProSiteProfiles Ankyrin repeat profile. 744 776 IPR002110 GO:0005515
Lja1g4364 804 SUPERFAMILY ArfGap/RecO-like zinc finger 495 635 IPR037278 -
Lja1g4364 804 SUPERFAMILY Ankyrin repeat 667 798 IPR036770 -
Lja1g4364 804 SMART 5bar 5 218 IPR004148 GO:0005515|GO:0005737
Lja1g4364 804 Pfam PH domain 296 430 IPR001849 -
Lja1g4364 804 Gene3D Arf GTPase activating protein 477 637 IPR038508 -
Lja1g4364 804 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 802 - -
Lja1g4364 804 SMART PH_update 295 433 IPR001849 -
Lja1g4364 804 SMART ANK_2a 711 740 IPR002110 GO:0005515
Lja1g4364 804 SMART ANK_2a 744 773 IPR002110 GO:0005515
Lja1g4364 804 Gene3D - 638 800 IPR036770 -
Lja1g4364 804 MobiDBLite consensus disorder prediction 468 489 - -
Lja1g4364 804 CDD PH_ACAP 297 435 - -
Lja1g4364 804 Pfam Ankyrin repeats (3 copies) 716 799 IPR002110 GO:0005515
Lja1g4364 804 CDD ArfGap 498 627 - -
Lja1g4364 804 SUPERFAMILY BAR/IMD domain-like 6 317 IPR027267 -
Lja1g4364 804 Pfam Putative GTPase activating protein for Arf 498 629 IPR001164 GO:0005096
Lja1g4364 804 Coils Coil 118 138 - -
Lja1g4364 804 ProSiteProfiles PH domain profile. 294 431 IPR001849 -
Lja1g4364 804 PRINTS HIV Rev interacting protein signature 526 543 IPR001164 GO:0005096
Lja1g4364 804 PRINTS HIV Rev interacting protein signature 549 570 IPR001164 GO:0005096
Lja1g4364 804 PRINTS HIV Rev interacting protein signature 507 526 IPR001164 GO:0005096
Lja1g4364 804 SMART arf_gap_3 495 640 IPR001164 GO:0005096
Lja1g4364 804 Gene3D - 287 438 IPR011993 -
Lja1g4364 804 PANTHER CENTAURIN/ARF 1 802 IPR045258 GO:0005096
Lja1g4364 804 Gene3D Arfaptin homology (AH) domain/BAR domain 4 249 IPR027267 -
Lja1g4364 804 ProSiteProfiles Ankyrin repeat profile. 711 743 IPR002110 GO:0005515
Lja1g4364 804 ProSiteProfiles ARF GTPase-activating proteins domain profile. 495 640 IPR001164 GO:0005096
Lja1g4364 804 SUPERFAMILY PH domain-like 204 430 - -
Lja1g4364 804 ProSiteProfiles Ankyrin repeat region circular profile. 744 776 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lja1g4364 Lja-Chr1 56376209 56384205 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4364 472 634 C2H2 Transcription Factor Family AT4G21160 36.585 8.05e-22 95.9
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4364 K12489 - gmx:100797073 1134.01
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4364 1 56376209 56384205 Lja4g0496 4 4056733 4065372 ECH
Lja1g4364 1 56376209 56384205 Lja1g4364 1 56376209 56384205 ECH