Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4363 ATGGCATCATCAGAGGTGGCGATGAAGGGGAATTGTCCGAACCACGGTGATGGTGGTCGGAGCGTAACAACCGAGGGACAGAATGGTCATTCAGCGTCGACGGCGAGAGACGCGGAAGCTGCGCTGTACAGGGAGCTATGGCATGCTTGTGCTGGTCCTCTTGTGACGGTGCCACGGGAAGGAGAACGAGTCTTCTACTTCCCTCAGGGACATATTGAACAGGTGGAGGCTTCAACGAATCAGGTGGCGGACGAGCATATGCCGGTTTACGATCTCCCATCTAAGATCCTATGCCGGGTCATCAACGTGCAGCTGAAGGCGGAGCCGGATACGGATGAGGTGTTTGCTCAGGTGACCTTACTTCCTGAGCCAAATCAAGATGAGAATGCCGTGGAGAAGGAGCCTCCGCCACCGCCGCCGCCACGATTTCATGTGCATTCTTTCTGTAAAACCTTGACGGCCTCCGATACCAGCACCCATGGTGGGTTTTCCGTGCTGAGACGACATGCTGATGAGTGCCTTCCTCCACTGGACATGTCAAAGCAGCCACCAACCCAGGAATTGGCGGCTAAGGATTTGCATGGGAATGAATGGCGATTTAGACACATCTTTCGCGGTCAACCCCGTAGACACTTACTTCAGAGTGGTTGGAGTGTTTTTGTGAGCTCCAAAAGGCTTGTCGCTGGGGATGCATTTATTTTTCTAAGAGGTGAGAATGGGGAACTTCGTGTTGGTGTAAGGCGAGCAATGAGACAGCAGGGCAATGTTCCACCATCAGTTATCTCTAGCCACAGCATGCATCTTGGGGTCCTTGCAACTGCTTGGCATGCTATCTTGACGGGAACTATATTCACTGTTTATTACAAGCCCAGGACCAGTCCTGCTGAGTTCATTGTTCCATATGATCAATATATGGAGTCTCTCAAAACAAATTATACCGTAGGAATGCGGTTTAAAATGAGATTTGAAGGTGAAGAAGCTCCGGAGCAGAGGTTTACCGGTACCGTTGTTGGAATAGAAGATGTTGATTCCAAAAGTTGGAGAGATTCCAGATGGAGATGCCTCAAGGTGAGATGGGATGAAACGTCTAACACGCCTCGTCCTGACCGAGTTTCCCCATGGAAAATAGAGCCTTCTCTTGCTCCTCCTGCTCTGAATCCTCTTTCAATGCCCAGACCTAAAAGGCCTCGATCTATTGCTGTTCTTTCATCGCCAGATTCTTCTGTTCTTACTCGAGAAGCTTCGTCAAAAGTAAGTGTAGACCCTTTACCTGCAAATGGGTTTCCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATATTGCAGAAAGCAATGAGTCTGATACGGCTGAGAAGTCTGTTGCTTGGCCACCTGCAGTAGATGATGAAAAAATGGATGTTGTTTCTACTTCAAGGAGGTATGGATCAGAGAGCTGGATGTCAATGGGGAGGAACGAGGCTACGTATTCAGATCTTCTTTCAGGCTTTGGGGCTGGTGGAGATCCTTCTCATGCATCCATGGGTGATCAAATGACCCATGTAGCTTATCCTGCTAGAAAGCCTTCAGTGGATCATGAAGGCAATCTTCATGTGCATCATACGTGGCACGTAACACCTTCGGGTCTGTCACTGAACCTCTTGGACAATACAAAAGGTTCTGCACATGGTGATGATACAGCTTACCAAGCTCGAGGAAGTTCGAGGTACACTGCATTCGGTGAATACCCTATGCTCCATGGCCATAAAGTTGAGCATTCACATGGAAACTTGATGCCACACCCATCCTCAACTCAATATCAGAGTCCTCGTTCAAGAGAACTAATGTCGAAGCCATTGTCAGTGAAAGCTTGTGAGGCTGTTAAGCCAAAAGATGGTGACTGTAAGCTATTTGGCATTTCACTTATCAGTAGCCCTGTTGCACCAGAACCTTCTGTATCACAAAGAAATGGGACAACTGAGACAGCTGATCCAATGCATATTGCATCACGTCAACACAGAACTTCTGAAGATCAGAATTCAGATCACTCAAAGGGCTCAAAACTAGAAGATGGTCAAGTTGTCGTTTATGACCCTGAAAAGTCATTTCAAACTTCTCATCTGCATCTGAAAGATGTTCAATCCAAATCACAAAGTTCTGCCAGGAGTTGCACTAAAGTTCACAAGAAGGGGATTGCACTTGGTAGGTCAGTAGACCTTACGAAGTACAGCGGCTATGAAGAATTGGTTGCTGAATTGGATCAGCTGTTTGACTTTGGGGGTGAATTAATGTCAACAAAAAAGGAATGGCTCATTGTCTATACTGATAATGAGGGTGACATGATGCTTGTAGGCGATGATCCATGGCAGGAGTTCTGTTCAATGGTTCGGAAAATTTATATCTACCCGAAAGAGGAGATTCAGAAAATGAGTCCAGGTACCTTGAGTTCGAAAAATGAAGAGAATCTGTCAGCTAGCGAAGGCACGGATGCAAAAGAAGTTAAAGCTCAGCTGCATCAGAAACTAAATTCAGACAATGGCCCTGATAATTAG 2538 0.4693 MASSEVAMKGNCPNHGDGGRSVTTEGQNGHSASTARDAEAALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADEHMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPEPNQDENAVEKEPPPPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPPSVISSHSMHLGVLATAWHAILTGTIFTVYYKPRTSPAEFIVPYDQYMESLKTNYTVGMRFKMRFEGEEAPEQRFTGTVVGIEDVDSKSWRDSRWRCLKVRWDETSNTPRPDRVSPWKIEPSLAPPALNPLSMPRPKRPRSIAVLSSPDSSVLTREASSKVSVDPLPANGFPRVLQGQEFSTLRGNIAESNESDTAEKSVAWPPAVDDEKMDVVSTSRRYGSESWMSMGRNEATYSDLLSGFGAGGDPSHASMGDQMTHVAYPARKPSVDHEGNLHVHHTWHVTPSGLSLNLLDNTKGSAHGDDTAYQARGSSRYTAFGEYPMLHGHKVEHSHGNLMPHPSSTQYQSPRSRELMSKPLSVKACEAVKPKDGDCKLFGISLISSPVAPEPSVSQRNGTTETADPMHIASRQHRTSEDQNSDHSKGSKLEDGQVVVYDPEKSFQTSHLHLKDVQSKSQSSARSCTKVHKKGIALGRSVDLTKYSGYEELVAELDQLFDFGGELMSTKKEWLIVYTDNEGDMMLVGDDPWQEFCSMVRKIYIYPKEEIQKMSPGTLSSKNEENLSASEGTDAKEVKAQLHQKLNSDNGPDN* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4363 845 MobiDBLite consensus disorder prediction 593 608 - -
Lja1g4363 845 Pfam AUX/IAA family 760 805 IPR033389 -
Lja1g4363 845 Pfam AUX/IAA family 631 753 IPR033389 -
Lja1g4363 845 Gene3D - 712 806 - -
Lja1g4363 845 CDD B3_DNA 146 248 IPR003340 GO:0003677
Lja1g4363 845 MobiDBLite consensus disorder prediction 17 34 - -
Lja1g4363 845 MobiDBLite consensus disorder prediction 820 834 - -
Lja1g4363 845 PANTHER AUXIN RESPONSE FACTOR 2 27 824 - -
Lja1g4363 845 MobiDBLite consensus disorder prediction 805 845 - -
Lja1g4363 845 ProSiteProfiles B3 DNA-binding domain profile. 148 250 IPR003340 GO:0003677
Lja1g4363 845 Gene3D - 145 250 IPR015300 -
Lja1g4363 845 MobiDBLite consensus disorder prediction 805 819 - -
Lja1g4363 845 MobiDBLite consensus disorder prediction 662 684 - -
Lja1g4363 845 MobiDBLite consensus disorder prediction 641 687 - -
Lja1g4363 845 MobiDBLite consensus disorder prediction 589 608 - -
Lja1g4363 845 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 27 824 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lja1g4363 845 MobiDBLite consensus disorder prediction 642 661 - -
Lja1g4363 845 SUPERFAMILY CAD & PB1 domains 717 794 - -
Lja1g4363 845 Pfam B3 DNA binding domain 148 249 IPR003340 GO:0003677
Lja1g4363 845 SUPERFAMILY DNA-binding pseudobarrel domain 144 277 IPR015300 -
Lja1g4363 845 Gene3D - 311 381 - -
Lja1g4363 845 ProSiteProfiles PB1 domain profile. 717 799 IPR000270 GO:0005515
Lja1g4363 845 SMART B3_2 148 250 IPR003340 GO:0003677
Lja1g4363 845 MobiDBLite consensus disorder prediction 1 34 - -
Lja1g4363 845 MobiDBLite consensus disorder prediction 362 404 - -
Lja1g4363 845 Pfam Auxin response factor 274 356 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4363 Lja-Chr1 56339671 56344937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4363 1 839 B3 DNA Binding Superfamily AT5G62000 63.940 0.0 1086
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lja1g4363 AUX_IAA 8.3e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4363 - - gmx:100797082 1405.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4363 1 56339671 56344937 Lja1g4363 1 56339671 56344937 ECH
Lja4g0492 4 4026728 4032521 Lja1g4363 1 56339671 56344937 PCT
Lja1g4363 1 56339671 56344937 Lja4g2399 4 26872228 26874893 PCT