Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4362 ATGTTGTCCAGAATAAACAACGGTTCCTGGATGGATGAAAGAGAGGATGAAAACTCTGCTTCTGCTTCTTGGGCCAGAAACTCCAAGCCAAACTCCACTGGTTTTGTTGAAAACAGAGATGATTTGGGTTCTCTCTGTGCTTTGAAACCCATGCTTGAAGTGGATGAGGAATGGTTCATGATGAGGGACATGGCTTTTGACAACGTTTTGCTCCAAACCGTGGACTCTCACTCTGCATCTTCATGTTCTCCATCTTCCTCTGTTTTCAACACACTTGAACCTTCATCATCGCAGTATTTTCTGCCTCCGAATCCCAAACCACCCACTTTATCTTCTCTTCTCAACCCTTTTGACATGGGGTTTCTTGATCCTCAAGGTTCCACCACTTCTTCTCTTCTGGGTAGCTTCGTTGAGCTGAACAACTCAAAACCCCAGTTAACACTTCCTAACTTCACCTCAGGCACTACCATGACCATGCCCCATTTGCCACAAAGCAACACTTCCTTTGGAGGATTTCAGAACTTGGAAGAAGCTTCTGGAAAGACTCCATTTCTGAACAGGTCCAAGATTTTGAGACCGCTTGAATCTTTGCCTCCTTCTGGGGCACAACCTACTCTGTTTCAGAAGAGAGCTGCGCTTAGAAAAAACATGGGTTCGGGTTCTTCTCCTGTTCAGAGTAAGGGTGAAATTGGTGAAGGGAGTGATAAGAAAAGGAAGCTGAGTATTGGAGATGAGTACGAAGATGCGAGCTTTGATGGGTCTGGGTTGAACTATGATTCTGATGACTTGATTGAGAGTAAGATGGAAGAGAATAGTGCTAAGAATGGTGGAGCCTCTAATGGCAACAATAGCACTGTCACTGGCGGCGGTGTGGATCAGAAAGGGAAGAAGAAGGGATTGCCTGCTAAGAATTTGATGGCGGAACGCCGCCGTAGGAAGAAGCTCAATGATAGGCTCTACATGCTGAGGTCCGTTGTTCCAAAGATTAGCAAAATGGACAGGGCATCAATCCTTGGGGATGCAATTGAGTATCTGAAGGAACTGCTGCAAAGGATCAATGATCTTCACAATGAGCTGGAGTCCACACCTAATTCTGGGTCTTGTTCACTCACACCTGTTTCAAGCTTCCATCCTTTGACACCTACTCCAACAGCACTTCCTGGCCGTATTAAAGAAGAACTGTGCCCCAGCTCATTGCCAAGCCCCAATGGCCAACCTGCCAGGGTTGAGGTTCGGTTGCGTGAAGGAAGAGCTGTGAATATCCACATGTTTTGTGCCCGCAAACCCGGTTTGTTGCTCTCAACCATGAGGGCTTTGGATAATCTTGGTTTGGACATTCAGCAAGCTGTTATCAGCTGTTTCAATGGATTTGCTATGGATGTTTTTCGAGCTGAGCAATGCAACGAAGGTCAGGAAGTCCATCCGGAGCACATCAAAGCAATACTATTGGAGTCAGCTGGCTTCCATGGCTTGATCTAA 1479 0.4632 MLSRINNGSWMDEREDENSASASWARNSKPNSTGFVENRDDLGSLCALKPMLEVDEEWFMMRDMAFDNVLLQTVDSHSASSCSPSSSVFNTLEPSSSQYFLPPNPKPPTLSSLLNPFDMGFLDPQGSTTSSLLGSFVELNNSKPQLTLPNFTSGTTMTMPHLPQSNTSFGGFQNLEEASGKTPFLNRSKILRPLESLPPSGAQPTLFQKRAALRKNMGSGSSPVQSKGEIGEGSDKKRKLSIGDEYEDASFDGSGLNYDSDDLIESKMEENSAKNGGASNGNNSTVTGGGVDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPNSGSCSLTPVSSFHPLTPTPTALPGRIKEELCPSSLPSPNGQPARVEVRLREGRAVNIHMFCARKPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAEQCNEGQEVHPEHIKAILLESAGFHGLI* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4362 492 MobiDBLite consensus disorder prediction 272 290 - -
Lja1g4362 492 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 302 371 IPR036638 GO:0046983
Lja1g4362 492 MobiDBLite consensus disorder prediction 21 36 - -
Lja1g4362 492 SMART finulus 305 354 IPR011598 GO:0046983
Lja1g4362 492 MobiDBLite consensus disorder prediction 215 239 - -
Lja1g4362 492 MobiDBLite consensus disorder prediction 270 298 - -
Lja1g4362 492 CDD bHLH_AtAMS_like 302 367 - -
Lja1g4362 492 Gene3D - 293 364 IPR036638 GO:0046983
Lja1g4362 492 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 299 348 IPR011598 GO:0046983
Lja1g4362 492 MobiDBLite consensus disorder prediction 1 36 - -
Lja1g4362 492 CDD ACT_UUR-ACR-like 421 481 - -
Lja1g4362 492 Pfam Helix-loop-helix DNA-binding domain 306 348 IPR011598 GO:0046983
Lja1g4362 492 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 80 491 - -
Lja1g4362 492 Coils Coil 338 362 - -
Lja1g4362 492 PANTHER BHLH TRANSCRIPTIONAL FACTOR 80 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4362 Lja-Chr1 56334489 56338901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4362 23 465 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 50.309 5.11e-119 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja1g4362 HLH 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4362 - - gmx:100217332 594.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4362 1 56334489 56338901 Lja1g4362 1 56334489 56338901 ECH