Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4360 ATGAACTTGCCAACATGGAAGTTCAATACCATGGCATTGGCTGTGTTTTTGCTTCATCTGAGTTTCTCCTTGAAGGTGTTCTGTTTCTCTTCTGATGCAGATAGAATTGTTGAGCTTCCTGGGCAACCCCACATAGGATTCCAACAGTTCTCAGGATATGTCACTGTGGATGACATGAAACACAAGTCTCTTTTTTACTATTTTGCTGAATCAGAAACTGATCCAGCTTCAAAACCTCTTGTTCTCTGGCTCAATGGAGGACCTGGTTGTTCTTCTCTTGGAGTTGGTGCATTCTCTGAAAATGGACCCTTTAGACCAAATGGGGAGTTTTTGATTCAAAATGAGCATAGTTGGAATATAGAGGCAAACATGCTGTATTTGGAGACACCAGTTGGAGTGGGGTTCTCATATGCTAGAGGTAGTTCCTCCTATATGACAGTGAATGATGAGGTAACAGCCAGGGACAATGTTGTATTCCTGGAACGCTGGTTCAACAAGTTCCCACAATACAGGAATAGAGATTTGTTTCTAACTGGGGAAAGTTATGCAGGTCATTATGTTCCTCAACTTGCAAATCTCATGATTGAAATGAACAAAAAGAACAAGATATTCAATCTGAAAGGCATAGCTTTGGGTAATCCAGTTCTAGAATATGCCACTGACTTCAATTCAAGGGCTGAGTTCTTCTGGTCTCATGGACTAATATCAGATTCAACATATAACATGTTCACTAGAGTGTGTAATTATTCTCGGTATGTTAGTGAGTACTATAGAGACTCAGTTTCACCTCTTTGCTCAAAGGTTATGGGACAGGTGAGCAAAGAAACCAGTAAATTTGTGGACAAATATGATGTCACCCTTGATGTTTGCATTTCCTCAGTGTTATCACAATCGAAGGTTATTTCTCCTCAAACACATCAAGCAAATGAGAGGATAGATGTGTGCGTAGATGACAAGGTTACAAACTACTTAAACCGTAGAGATGTACAAGAGGCACTTCATGCAAAGCTTGTTGGAGTTCGCAAGTGGGATGTTTGCAGCAACGTCTTGGACTATGATATGCTCAACCTGGAAGTGCCTACACTCCCAATTGTTGGATTACTGATAAAATCTGGAGTTCGGGTCTTAATTTACAGTGGAGATCAAGATTCAGTAATTCCATTGACCGGAAGCCGCACCTTAGTTCAAAAGTTGGCAACAAAATTAGGACTGAATACAACAGTCCCTTACAGAGTATGGTTTGAAGGCCAGCAGGTTGGTGGGTGGACTCAAGTTTATGGCAGCATCCTTTCATTTGCCACTGTTAGAGGTGCCTCTCATGAAGCCCCATTCTCTCAGCCTGAAAGATCATTTGCTTTGTATATGTTGGGTGATATCACAGCAGGGCCTGCTTTAATGTTCACTCAATGGCTTCATTTAGTCCGTAAACGGACTTCGAACTATCGCCCCTCCGGCTTCCCTCACCGTCTTTCCACCATGCCTTCTTGTGTGGTAGAATCTGCTGAGGATGCAGAAATTGACCAGCCTCCTGAGCAAACGGAAATAAGCTTGTGGGAGAGACTTGGTAAGGCTGAAATGTTGGACATTGAATCGAGCTCCTTTTCTTGGGATAGGCTCTCTTCACTTCACCATACTGAGCACACTTGCGGCAGTGAACATTCTGAGGATGAAATGAACAGAGCTCTTGAGGTAACGGTAAATTCTGGAGGGGTTGTCTTCTTTGCCTTTTTCAATGTTCTTGGGACTGGGAGTGATGATGCTTTTCCAAAAGAAGCAGCAGCTGTTATAAAGATATCACCATCAAGAATGGCAACACAGTCTGAACGCCTTGGTTATGAATTTGCCAAGTGGTTGGGAGTCCAAACTCCACAGGCTAGAGTTATTCACAATACCAGTTCAGAATGGCTCCAAATAAAGAAAGCTGCAGAAAAAGCCAGAGATACAGCAAGTTGTGAGGGTGCTGAAATTGGTGAAATGTCATGTTCAGAACTTTTGGAAGCACTGGATCTTAGTCGATGTCTCTTGTTTATGAGTTATGTGCATGGTTCACCTTTGCTTGAAAGCTCTAGCGCATTTGAAACCCAGGATTCTGCAGAAAGAATATCAGCAGCTCTTGGCAGGGTAATGATGCTGGATCTTGTCATCAGAAATGAAGATAGGCTCCCTTGCCGTCAACTTAGGTGGCGTGGGAACTCTGCTAATTTGTTATTGGCTGAAAAGATGATCTCTCCGAAGACAGATACACTAGGAGAAGCTTTTAATTCTGCAAACAAGCAATATGGACCTAGGGTGATTAGGGAACTTAAGAAAGAAAGAAGGTCAACTTCAGTAGATGGAAGACTGAGTTCTCATAATCTTGGAAGGGTACTATCACAAGGTTCTTATCATTCAGAGACAATAGAATCATCAACATCGACGGACATGAGCCTTAATAGTCAAACATCAGGAGAATCATCGTTTACTGACTTCAACATTGTTGCTATTGACTCGGTCGTTCCTCGCCGACCCCCAGCTGGAATACGTGTAAATGATCAAGTTAATTATCCTAAGTTGGTTGAGTTGCTACTAAATAGCTCTGAATTTTCCTCTAACCTGTTACATGATATAACTGGTGGGAGATTAGGATGTTCTCCCCCAGAAGAGTTGAATACAACAGCTGATGTTCAAGCAAGTGATGTAATATCAGTAGTTCATGAGTTCCGTAGTGGTTTTCGTGCTGCACTAAGGGATCTGCAGGGATTCCATATATTCCTACTCACACTTCACCAAAAACTTGATAACTTGTTAAGATCATTTAATAATATTATGAGCAAAATATCACTGGGGGAGTCTGATAAAGAGGATTCACCAGTTCCTGACTCACCTTCACCGACTTCTGCTTATGGTTGTCACTCTCCAACAAGTAAAGAGAGGTTATCTAATGATAGACATCAAGACTTTAGTGATTCAGAATCACAGAGAACTGCTCCAAGGGCATCATCATCTTCAGGCAATAGAGATTGCTGTGACTCTGCATCTTCTGTGTCAAGAGAAGGTTGGCATGGAAAGTTCTCTAAAGGAAGTGGGGAGCCACTTCATGGTCACCGCTTTACAGCTAAGCTCCGTGACTTCCATAAAATTGCTAAGGTTGATGCTGAATCTTCTAAAGAATTGGAACAATGGAACGAAATGCTTAAAAATGATGCTATCAAATTATGCCAGGAGAACAATTTCAATACAGGATTTTTTGAGGGTAGTGATAACAACACTGTTTCTGATGCATGTGAACTGAAGGTCAGACTTGAGCATATCCTTGAGAGGATTGCATTGATATCTGAGGCTGCAAATACAGAAAGGCCATCTGCTGTTACAAATAGTCTTTTTATTGGTGGAGCACTAGCTGCAAGATCTGTATACACACTGCAACACTTGGGAATCACCCATATTTTGTGTCTGTGTACTAATGAAATTGGACAGTCAGATTCTCAGTTTCCCGATCTATTCACATACAAAAATTTCTTCATCTATGACAATGTGGATTCCAACATCAGCAGCATATTTGACGAAGCTTGTGATTTTATAGATTATGTTGAGCAAATAGGTCAGAGAGTTTTAGTCCATTGCTTTGAGGGGAAAAGCAGAAGTGTCACTTTGGTCCTAGCTCACCAGATGCTCAGGAAGAATTTCACCTTATTAGAAGCATGGAATGCTTTGAAACGAGTTCACCGTCGAGCACAGCCTAATGATGGTTTCGCAAAGGTATTACTGGAACTCGATCAGAAACTGCACGGGAAGGTTTCAATGGAGTGGCAGCAGCGGAAACCAATGATGAGGATTTGCCCCATATGTGGCAAGAATGCTGGAATAAGCAGCAGCTCACTTACGCTCCATCTTCAGAAATCACATAAAAGGCTATCATCAGGGAGTGTAGACAGTGCCATGACAATGGAGATCCAAAAGGCATTATCAGCTTTGAAGATAAGCCGTGGTGGGAGTGTCAATCCCTTTCAAAAGCAGTCTCATGCAATGGTAGATGAATAG 4020 0.4192 MNLPTWKFNTMALAVFLLHLSFSLKVFCFSSDADRIVELPGQPHIGFQQFSGYVTVDDMKHKSLFYYFAESETDPASKPLVLWLNGGPGCSSLGVGAFSENGPFRPNGEFLIQNEHSWNIEANMLYLETPVGVGFSYARGSSSYMTVNDEVTARDNVVFLERWFNKFPQYRNRDLFLTGESYAGHYVPQLANLMIEMNKKNKIFNLKGIALGNPVLEYATDFNSRAEFFWSHGLISDSTYNMFTRVCNYSRYVSEYYRDSVSPLCSKVMGQVSKETSKFVDKYDVTLDVCISSVLSQSKVISPQTHQANERIDVCVDDKVTNYLNRRDVQEALHAKLVGVRKWDVCSNVLDYDMLNLEVPTLPIVGLLIKSGVRVLIYSGDQDSVIPLTGSRTLVQKLATKLGLNTTVPYRVWFEGQQVGGWTQVYGSILSFATVRGASHEAPFSQPERSFALYMLGDITAGPALMFTQWLHLVRKRTSNYRPSGFPHRLSTMPSCVVESAEDAEIDQPPEQTEISLWERLGKAEMLDIESSSFSWDRLSSLHHTEHTCGSEHSEDEMNRALEVTVNSGGVVFFAFFNVLGTGSDDAFPKEAAAVIKISPSRMATQSERLGYEFAKWLGVQTPQARVIHNTSSEWLQIKKAAEKARDTASCEGAEIGEMSCSELLEALDLSRCLLFMSYVHGSPLLESSSAFETQDSAERISAALGRVMMLDLVIRNEDRLPCRQLRWRGNSANLLLAEKMISPKTDTLGEAFNSANKQYGPRVIRELKKERRSTSVDGRLSSHNLGRVLSQGSYHSETIESSTSTDMSLNSQTSGESSFTDFNIVAIDSVVPRRPPAGIRVNDQVNYPKLVELLLNSSEFSSNLLHDITGGRLGCSPPEELNTTADVQASDVISVVHEFRSGFRAALRDLQGFHIFLLTLHQKLDNLLRSFNNIMSKISLGESDKEDSPVPDSPSPTSAYGCHSPTSKERLSNDRHQDFSDSESQRTAPRASSSSGNRDCCDSASSVSREGWHGKFSKGSGEPLHGHRFTAKLRDFHKIAKVDAESSKELEQWNEMLKNDAIKLCQENNFNTGFFEGSDNNTVSDACELKVRLEHILERIALISEAANTERPSAVTNSLFIGGALAARSVYTLQHLGITHILCLCTNEIGQSDSQFPDLFTYKNFFIYDNVDSNISSIFDEACDFIDYVEQIGQRVLVHCFEGKSRSVTLVLAHQMLRKNFTLLEAWNALKRVHRRAQPNDGFAKVLLELDQKLHGKVSMEWQQRKPMMRICPICGKNAGISSSSLTLHLQKSHKRLSSGSVDSAMTMEIQKALSALKISRGGSVNPFQKQSHAMVDE* 1340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4360 1339 SMART dsp_5 1112 1254 IPR020422 GO:0006470|GO:0008138
Lja1g4360 1339 Gene3D - 315 351 - -
Lja1g4360 1339 Gene3D Protein tyrosine phosphatase superfamily 1095 1267 IPR029021 -
Lja1g4360 1339 SUPERFAMILY alpha/beta-Hydrolases 38 453 IPR029058 -
Lja1g4360 1339 MobiDBLite consensus disorder prediction 942 1025 - -
Lja1g4360 1339 Pfam Dual specificity phosphatase, catalytic domain 1126 1253 IPR000340 GO:0008138|GO:0016311
Lja1g4360 1339 MobiDBLite consensus disorder prediction 951 968 - -
Lja1g4360 1339 Gene3D - 361 456 - -
Lja1g4360 1339 MobiDBLite consensus disorder prediction 969 984 - -
Lja1g4360 1339 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 1170 1233 IPR000387 GO:0016311|GO:0016791
Lja1g4360 1339 CDD DSP 1113 1250 - -
Lja1g4360 1339 Gene3D - 684 810 IPR036940 GO:0016301
Lja1g4360 1339 ProSiteProfiles Dual specificity protein phosphatase domain profile. 1112 1257 IPR020422 GO:0006470|GO:0008138
Lja1g4360 1339 PANTHER DUAL SPECIFICITY PHOSPHATASE FAMILY PROTEIN 438 1338 - -
Lja1g4360 1339 ProSitePatterns Serine carboxypeptidases, serine active site. 177 184 IPR018202 GO:0004185
Lja1g4360 1339 ProSitePatterns Serine carboxypeptidases, histidine active site. 430 447 IPR033124 GO:0004185
Lja1g4360 1339 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 1112 1257 IPR029021 -
Lja1g4360 1339 SUPERFAMILY Protein kinase-like (PK-like) 469 846 IPR011009 -
Lja1g4360 1339 Gene3D alpha/beta hydrolase 30 292 IPR029058 -
Lja1g4360 1339 MobiDBLite consensus disorder prediction 985 1005 - -
Lja1g4360 1339 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 438 1338 IPR035010 GO:0004721|GO:0009737|GO:0043622
Lja1g4360 1339 Pfam Actin-fragmin kinase, catalytic 514 757 IPR015275 -
Lja1g4360 1339 PRINTS Carboxypeptidase C serine protease (S10) family signature 114 126 IPR001563 GO:0004185|GO:0006508
Lja1g4360 1339 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 137 IPR001563 GO:0004185|GO:0006508
Lja1g4360 1339 PRINTS Carboxypeptidase C serine protease (S10) family signature 430 443 IPR001563 GO:0004185|GO:0006508
Lja1g4360 1339 PRINTS Carboxypeptidase C serine protease (S10) family signature 163 188 IPR001563 GO:0004185|GO:0006508
Lja1g4360 1339 MobiDBLite consensus disorder prediction 792 815 - -
Lja1g4360 1339 Pfam Serine carboxypeptidase 44 453 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4360 Lja-Chr1 56303367 56316728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4360 440 1323 Protein tyrosine phosphatase (PTP) family AT5G23720 62.262 0.0 1068
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4360 K14165 - gmx:102661225 1328.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4360 1 56303367 56316728 Lja1g4360 1 56303367 56316728 ECH