Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4357 ATGGCAGCTTTTTCATACCAGTGTCACCCTTTCCTTGTTGACCCATCATTCTTGCTCAACATAAACACTGGTTCTCCTCCTCTTCCTACTCAATTTCCCCTTCATCAAGAAGCTTCTCTGAATGTTACAAATCAGGACACAAGCTGTGCTGATCAGAGCTCCAAAATCACCATCAGTGACAATGAGCCTTCTATAACAAAAAACCTTAGTCCTCAGTCTTCCATGGTGGTAGACAAGCTTGAAATTGGTGAACAGGTCACTCAGAAGGTGACCCCTAAGAGAAGAAGCAGAAAAGATTCTTCATTGAATGAACCCCAATCTAAGGATGATGCAACCGAAGGGAGAAGCAAGAAACAGAAGAAGAGCAATGGTGGGGTGAAAGATCAGGACAAGGCAAGAACTGAGAAGAAAGAACAGAGAAAATGTCCGGAAGAGCCCCCAACAGGCTATATCCATGTCAGAGCAAGAAGGGGTCAGGCCACGGATAGCCACAGCCTTGCTGAAAGGGTAAGAAGGGAGAAAATAAGTGAAAGGATGAAAAGGTTGCAGAGACTTGTGCCAGGCTGTGATAAGGTGACTGGAAAGGCCCTTATGTTGGATGAAATAATCAATTATGTTCAGTCATTACAGAATCAAGTGGAGTTCTTGTCAATGAAGCTTGCTTCTGTGAATCCCATGTTCTATGATATGGCAACTGACCTAGACACCCTCTTGGTTAGACCAGAGAAATTAAATAGCTTAGCATCACCATCACCTCTTTCATCAGTGTCACATTCACATTGCAACAGTCCCAACCAAGCCACAACAACTTTTGCTGAAACAACCAATTCCATCTTCCACACTGCTAATGACTTCCTTTTGGATAATTCATCACCTTTTTTTCTTCAAGGGCAGAGATCAAATTTACCATCTGAGGAAACGGGTTGTCAATTCTGGGACACAGAAGATCAGAGACAAAAGTTTCTTCTTCATCCATATGGATTCAGCAACAATTTAAGTTCCTTTCATTAA 1011 0.4243 MAAFSYQCHPFLVDPSFLLNINTGSPPLPTQFPLHQEASLNVTNQDTSCADQSSKITISDNEPSITKNLSPQSSMVVDKLEIGEQVTQKVTPKRRSRKDSSLNEPQSKDDATEGRSKKQKKSNGGVKDQDKARTEKKEQRKCPEEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKRLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMFYDMATDLDTLLVRPEKLNSLASPSPLSSVSHSHCNSPNQATTTFAETTNSIFHTANDFLLDNSSPFFLQGQRSNLPSEETGCQFWDTEDQRQKFLLHPYGFSNNLSSFH* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4357 336 MobiDBLite consensus disorder prediction 88 167 - -
Lja1g4357 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 209 IPR011598 GO:0046983
Lja1g4357 336 Gene3D - 156 229 IPR036638 GO:0046983
Lja1g4357 336 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 336 - -
Lja1g4357 336 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 336 IPR024097 GO:0006355
Lja1g4357 336 MobiDBLite consensus disorder prediction 59 75 - -
Lja1g4357 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 226 IPR036638 GO:0046983
Lja1g4357 336 Pfam Helix-loop-helix DNA-binding domain 163 210 IPR011598 GO:0046983
Lja1g4357 336 MobiDBLite consensus disorder prediction 59 167 - -
Lja1g4357 336 CDD bHLH_AtBPE_like 149 234 - -
Lja1g4357 336 SMART finulus 165 215 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4357 Lja-Chr1 56264814 56267545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4357 105 242 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 65.217 2.75e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja1g4357 HLH 4.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4357 - - gmx:100806696 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4357 1 56264814 56267545 Lja1g4357 1 56264814 56267545 ECH