Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4355 ATGAAGGAATCGGATCCTATCACCGATTGCGTTCACCTTCTAACTTCCCTCCTCGACGAAGAAATCCCCACCGTCCAAAACCTCAAAACCAAGTGGTCACTCGTCCGAGTCAAACTCACCAACCTCCAAACCCACCTCACCGATTTCTCCGCCGAGTTTCCCTCCTCCTCCGCCACCAACCCACTCTCTCTCGACCTCTTCCACTCCCTCTCCGCCACTCTCCACTCCGCCGTCTCCCTCGCGCAACAGTGCCACTCCCCCACCCACCTCCCTCGCGGCAAGCTCCAAACCCAAAGCGACCTCGACTCCCTCCTCGCCACCCTCGACCGCCACCTCTCCCACTGCGACATACTACTCCGTAGTGGACTCCTCCTCGACGCCCCCGCTACCTCCAAGCGCGACGCCGTCCGATCCGCCTCCAGAAACCTCATCACCAGACTCCAAATCGGTGAGCCTGAGTCCCGCGCCGCCGCCATGGACTCTCTGCTTGCTCTCCTCCACCAGGATGATAAGAACGTCACCATCGCCGTCGCGCAAGGGCTGGTTCCGGTGCTCATCCGCCTTCTTGACTCCTCCTGCCCTGAAATGAAGGAGAAAACCGTCGCCGCCATCTCTAGGGTTTCCACCGTCGATAGCGGCAAGAACGTGCTGCTTGCAGAAGGGTTGCTACTGCTAAACCACCTCCTTCGAATTCTGGACTCTGGTAGCGGGTTTGCGATAGAGAAAGCTTGCATAGCGCTTCAAGCGTTGAGTTTCACCAAAGACAACGCCAGAGCAATTGGGTGCAGAGGTGGAATCTCGTCGCTGTTGGGGATCTGCCAGGCTGGAACCCCTGGCTCGCAAGCTTCTGCGGCGGCGGTTTTGAGGAATCTGGCGAAGTTCACCGAGATCAGGCAGAATTTCGCGGAGGAGAATGGGGTGGGTGTTCTGTTGGCGGTGGCTTCTTCTGGCACTGTGGTGGCTCAGGAGAATGCGATTGGGTGTTTGGCGAATTTGATCTCGGAGGATGAAGGCTTGAGGCTGACGGTGGTTAAGGAAGGTGGGGTGGGTTGTTTGAAGAATTTCTGGGATTCAGGTCCACCGGTTCAGAGTCTCGAGGTTGCGGTTGAGGCTTTGAGGCACTTGGGTTCGAGTGCCCCCATTGCTGAGGTTCTTGTTGCGGAAGGGTTTGTGGGGAGGGTGATGGGGTTGCTGAGTTGTGATGTTCTCGCGGTGAGGATTGCGGCGGCTAGAGCTGTTCATGCTTTGGGGTTAAGCAGCGGGAAGACGAGGAAGGAAATGGGAGAATGTGGGTGTGTTCCTGGTTTAATCAAAATGCTTGATGGGAAAGGTGTGGAAGAGAAAGAAGCTGCTGCAATGGCATTGTCGGTTCTGCTAATTCACCCGGGGAACAGAAGGGTGTTTCGTAAGGATGAAACAGGGATAGTGAGTGCGGTACATCTCTTGAACCCGTCGTTGCAGAATCTGGATAAGAAGTACCCTGTTTCGCTGCTACTCTCGCTCGTGCACTCCAAGAGTTGCAGGAAGCAAATGGTTGCGGCGGGGGCTTGTGTACATATGCAGAAGCTTGTGGAAATGGATGTCCCCGGGTCCAAGAAACTCTTGGAAAGCCTTGGTCGTGGTAAGATTTGGGGTGTTTTTGCTAGACCCTAG 1653 0.5584 MKESDPITDCVHLLTSLLDEEIPTVQNLKTKWSLVRVKLTNLQTHLTDFSAEFPSSSATNPLSLDLFHSLSATLHSAVSLAQQCHSPTHLPRGKLQTQSDLDSLLATLDRHLSHCDILLRSGLLLDAPATSKRDAVRSASRNLITRLQIGEPESRAAAMDSLLALLHQDDKNVTIAVAQGLVPVLIRLLDSSCPEMKEKTVAAISRVSTVDSGKNVLLAEGLLLLNHLLRILDSGSGFAIEKACIALQALSFTKDNARAIGCRGGISSLLGICQAGTPGSQASAAAVLRNLAKFTEIRQNFAEENGVGVLLAVASSGTVVAQENAIGCLANLISEDEGLRLTVVKEGGVGCLKNFWDSGPPVQSLEVAVEALRHLGSSAPIAEVLVAEGFVGRVMGLLSCDVLAVRIAAARAVHALGLSSGKTRKEMGECGCVPGLIKMLDGKGVEEKEAAAMALSVLLIHPGNRRVFRKDETGIVSAVHLLNPSLQNLDKKYPVSLLLSLVHSKSCRKQMVAAGACVHMQKLVEMDVPGSKKLLESLGRGKIWGVFARP* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4355 550 SMART arm_5 336 377 IPR000225 GO:0005515
Lja1g4355 550 SMART arm_5 378 418 IPR000225 GO:0005515
Lja1g4355 550 SMART arm_5 169 209 IPR000225 GO:0005515
Lja1g4355 550 SMART arm_5 294 334 IPR000225 GO:0005515
Lja1g4355 550 SMART arm_5 419 460 IPR000225 GO:0005515
Lja1g4355 550 SMART arm_5 253 293 IPR000225 GO:0005515
Lja1g4355 550 Gene3D - 359 537 IPR011989 -
Lja1g4355 550 PANTHER ARMADILLO-TYPE FOLD PROTEIN-RELATED 5 548 - -
Lja1g4355 550 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 5 548 - -
Lja1g4355 550 Gene3D - 141 358 IPR011989 -
Lja1g4355 550 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 180 222 IPR000225 GO:0005515
Lja1g4355 550 SUPERFAMILY ARM repeat 142 491 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4355 Lja-Chr1 56197267 56199260 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4355 142 380 U-box Gene Family AT3G46510 30.488 4.42e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4355 - - pvu:PHAVU_009G163700g 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4355 1 56197267 56199260 Lja1g4355 1 56197267 56199260 ECH