Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4351 ATGGGTTGCGTGCTCGGGACGCCGGATGGTGACGGAGCTCAGGATCAGCGCCGTCGCCGGAAAAGCCAGAGAAATGTTGCTTCCGACGGAGGTAATAATGCCGTTAGCGTTAGGGTTCGGGAGAAGAAAACGAATCGGCACACCGGCGATTTTCCCGGAACTGTTCCGGCGCCGGAGCGCCGGAAGCCTAGATTAGATCCGTTAGCGGTGACTCAACAAGGCTGGCCGGCTTGGTTAATGGCCGTCGCCGGCGAAGCAATCGGCGACTGGACTCCCCGGCGCGCCAGCTCGTTCGAGAAGCTTGCTAAGATTGGGCAAGGGACGTATAGCAATGTGTACAAGGCGAAAGACCTTCTTACTGGGAAGATTGTGGCGTTGAAGAAAGTTAGATTTGATAATTTGGAGCCTGAGAGTGTGAAGTTCATGGCAAGAGAGATACTTGTTCTTAGGAGGCTTGATCACCCCAATGTTGTGAAGCTTGAGGGGTTGGTTACTTCTAGAATGTCATGCAGTCTTTACTTGGTGTTTGAGTATATGGAACATGATCTTGCTGGGCTTGCAGCTGGGCAAGGTGTTAAATTCACTGAGCCACAGGTCAAATGCTTTATGAAGCAATTACTTTCTGGTCTTGAGCATTGCCACAGTCGAGGTGTATTGCACCGTGATATCAAGGGTTCTAATCTGCTTATTGACAATGAAGGAGTCCTTAAAATTGCAGATTTTGGACTTGCAACTTTCTTTGATCCTAAGGTGAAGCAGGCCTTGACAAGCAGAGTTGTGACCCTTTGGTATCGCCCCCCTGAGCTTCTTCTTGGGGCTACATTTTATGGTGTCAGTATTGACCTTTGGAGCGCTGGTTGCATCTTGGCAGAGCTGCTTGCTGGGAAGCCAATCATGCCTGGCCGCACAGAGGTTGAGCAACTGCACAAAATATTCAAGTTGTGTGGTTCTCCATCTGAGGAATATTGGAGGAAGTATAGATTGCCAAATGCTACAATGTTTAAGCCACAACAGCCATATAAACGGTGTATCTCAGAAACATTCAAGAATTTTCCTTCATCTTCACTGCCTTTAATTGAATCTCTTTTAGCAATAGATCCTGATAATCGTGGTACTGCCTCAGCTGCTCTAAACAGTGAATTCTTCACCACCGAACCCCATGCTTGTGAACCATCAAGTTTGCCAAAGTATCCTCCCAGCAAAGAATTGGATGTAAAACTGAGAGATGAGGAAGCTAGGAGGCAAAAAGCTCTAAATGGAAAAGCCAATGCAGTTGATGGTGCCAAAAGAGTCAGAGCACGTGAGCGCAGTCGAGCCATTCCGGCCCCTGAGGCCAATGCAGAGATCCAAACAAACTTAGATAGATGGAGAGTTGTGACCCATGCAAATGCTAAAAGCAAGAGTGAGAAATTTCCACCACCTCATCAAGATGGAGCTGTTGGATATCCACAGGATGCATCAAATAAAGAACCCGTTTCATTTGGCGGATCCGACTCTTCATTTGGTTCAGGGATTTTTAATATAAAACAATCTGAACCTGTTAGAAGTCACGATGCTGCAGGACGTTATAGAGGGAAGAAAACTAACCATGAAAACTCCAAGGCTTCATCATGGAAATTTGGGCGTCCATTTAAGCCATCAACAGTTGGACTTTCAATGAATTTGTTATTTAAGAGCAAATAA 1683 0.4646 MGCVLGTPDGDGAQDQRRRRKSQRNVASDGGNNAVSVRVREKKTNRHTGDFPGTVPAPERRKPRLDPLAVTQQGWPAWLMAVAGEAIGDWTPRRASSFEKLAKIGQGTYSNVYKAKDLLTGKIVALKKVRFDNLEPESVKFMAREILVLRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCFMKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGVLKIADFGLATFFDPKVKQALTSRVVTLWYRPPELLLGATFYGVSIDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWRKYRLPNATMFKPQQPYKRCISETFKNFPSSSLPLIESLLAIDPDNRGTASAALNSEFFTTEPHACEPSSLPKYPPSKELDVKLRDEEARRQKALNGKANAVDGAKRVRARERSRAIPAPEANAEIQTNLDRWRVVTHANAKSKSEKFPPPHQDGAVGYPQDASNKEPVSFGGSDSSFGSGIFNIKQSEPVRSHDAAGRYRGKKTNHENSKASSWKFGRPFKPSTVGLSMNLLFKSK* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4351 560 SMART serkin_6 98 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4351 560 Pfam Protein kinase domain 98 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4351 560 CDD STKc_CDK9_like 98 382 - -
Lja1g4351 560 MobiDBLite consensus disorder prediction 464 539 - -
Lja1g4351 560 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 71 537 - -
Lja1g4351 560 Gene3D Transferase(Phosphotransferase) domain 1 181 422 - -
Lja1g4351 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Lja1g4351 560 MobiDBLite consensus disorder prediction 515 533 - -
Lja1g4351 560 MobiDBLite consensus disorder prediction 490 510 - -
Lja1g4351 560 ProSitePatterns Protein kinases ATP-binding region signature. 104 127 IPR017441 GO:0005524
Lja1g4351 560 Gene3D Phosphorylase Kinase; domain 1 85 180 - -
Lja1g4351 560 MobiDBLite consensus disorder prediction 1 61 - -
Lja1g4351 560 PANTHER CELL DIVISION PROTEIN KINASE 71 537 - -
Lja1g4351 560 SUPERFAMILY Protein kinase-like (PK-like) 92 387 IPR011009 -
Lja1g4351 560 ProSiteProfiles Protein kinase domain profile. 98 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4351 Lja-Chr1 56171001 56174618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4351 90 416 Core Cell Cycle Gene Families AT5G10270 52.000 5.88e-117 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lja1g4351 Pkinase 1.5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4351 K08819 - gmx:100807756 981.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4351 1 56171001 56174618 Lja1g4351 1 56171001 56174618 ECH