Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4348 ATGAGAAGATTACCTCCTGGTTTATATTTTGAGCCAACAGATGAAGAGCTTGTCTTTCATTACTTGAAATCTAAGATCTTCTCGCGCAAGTTGCCATCAATTTCAATGATTCTTGACATAAATGTCTACCAAAACGACCCTTGGAATTTGCCAGGAAATTGTGATCAGAAAGATAAGTATTTTTTCAGCTCCAATTGTCAAAACCAAACAACCAAGTCTGGATATTGGAAAGAATCAGAATCAGACAAAAAAGTTCTACCATCATTAAGTGATGGAATTGAAGGGCTAAGAAAAACATTGGTATTTTATGAAGGGAAATCTCCAAATGGATCTCAAACTGATTGGAGCATGTATCAATATCGCCTAGTCAGTTCAGAAACTACTGCTTCCAATTATTCATCTCAGAACAATGAAGAGGAGATTGGGGATTGGGTTCTGTGTCACGTATTCAATAATAAGAATAGAAGCATGGAATGA 477 0.3606 MRRLPPGLYFEPTDEELVFHYLKSKIFSRKLPSISMILDINVYQNDPWNLPGNCDQKDKYFFSSNCQNQTTKSGYWKESESDKKVLPSLSDGIEGLRKTLVFYEGKSPNGSQTDWSMYQYRLVSSETTASNYSSQNNEEEIGDWVLCHVFNNKNRSME* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4348 158 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 3 156 - -
Lja1g4348 158 Gene3D NAC domain 13 157 IPR036093 GO:0003677|GO:0006355
Lja1g4348 158 ProSiteProfiles NAC domain profile. 4 152 IPR003441 GO:0003677|GO:0006355
Lja1g4348 158 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 3 156 - -
Lja1g4348 158 SUPERFAMILY NAC domain 3 151 IPR036093 GO:0003677|GO:0006355
Lja1g4348 158 Pfam No apical meristem (NAM) protein 5 122 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4348 Lja-Chr1 56155312 56156413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4348 3 153 NAC Transcription Factor Family AT5G13180 49.057 2.65e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja1g4348 NAM 1.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4348 - - gmx:100527806 202.986