Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4344 ATGTCGACTCGATCGACTGGAGCCATAAGCCAGGACTGGGAACCAGTGGTGCTGCACAAATCGAAGCCCAAGGCGCAGAACCTGCGGAACCCCAAGGCCGTGAAGCAGAAATCCGACGCCGGATCCAACAGGAAAACCGCTGGCCCGGTCGCGAATGCCAGGAAGCTTGACAAGGCGGCAGAGCTGGCGGCGCTGGAGCGCGTGGCGAAGATGATTCAGGCCAAGCTAGAGAAGCAGATCAATGAGCGGCCGCAGGTGGTGCAGGAGTATGAGAATGGTAGGGCGGTGCCGAATCAGAAGGTGCTCGCGAAGATGGAGAAGGTGCTCGGGGAGGAAGATGAAGATGTTGAAAGGTGGAGGTTGTGGATGATGGAGGATTCAGGAAGTTAG 390 0.5795 MSTRSTGAISQDWEPVVLHKSKPKAQNLRNPKAVKQKSDAGSNRKTAGPVANARKLDKAAELAALERVAKMIQAKLEKQINERPQVVQEYENGRAVPNQKVLAKMEKVLGEEDEDVERWRLWMMEDSGS* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4344 129 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 1 112 - -
Lja1g4344 129 CDD HTH_XRE 69 116 IPR001387 -
Lja1g4344 129 MobiDBLite consensus disorder prediction 31 45 - -
Lja1g4344 129 ProSiteProfiles Cro/C1-type HTH domain profile. 73 116 IPR001387 -
Lja1g4344 129 PANTHER MULTIPROTEIN-BRIDGING FACTOR 1C 1 112 - -
Lja1g4344 129 SMART mbf_short4 55 116 IPR001387 -
Lja1g4344 129 MobiDBLite consensus disorder prediction 1 53 - -
Lja1g4344 129 Coils Coil 62 82 - -
Lja1g4344 129 Gene3D - 45 114 IPR010982 GO:0003677
Lja1g4344 129 SUPERFAMILY lambda repressor-like DNA-binding domains 67 112 IPR010982 GO:0003677
Lja1g4344 129 Pfam Helix-turn-helix 70 111 IPR001387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4344 Lja-Chr1 56110930 56111394 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Lja1g4344 HTH_3 1.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4344 K03627 - twl:119996545 139.813