Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4336 ATGGGTGTAGTGAAGACAAAATGGAAGAAAATTTTGTTTTTGAAGGCTTGGATGTTGAAAGGTGCTAGTTCAAAAGGGCAAAGAGTCCCTAATGGTTGCTTTTCAGTATATGTTGGAGCTGAGAGACAAAGGTTTGTTGTGAAGACAGAGTTTGTGAACCACCCACTATTCAAGATGTTGTTGGACGAAGCAGAAGTAGAGTACGGGTTTAATAGTGATGGTCCTATTTGGCTTCCTTGCAACGTGGATTTGTTCTACAAAGTGTTGGCTGAGATATTGGCTGATGAGGAATATGACAAAAAGGTTATCATTGTTGCCAAGGCCAAGGGATCGTCTTCTTTATTCTTTCTTCTTCAAAGCCCAGCTCGTCTTCTTTCTTATATGAGTAGTAGGGATCATCGTGCATCTAGTGTTATGGATTCGGAAATGCTGTGA 435 0.4069 MGVVKTKWKKILFLKAWMLKGASSKGQRVPNGCFSVYVGAERQRFVVKTEFVNHPLFKMLLDEAEVEYGFNSDGPIWLPCNVDLFYKVLAEILADEEYDKKVIIVAKAKGSSSLFFLLQSPARLLSYMSSRDHRASSVMDSEML* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4336 144 PANTHER SMALL AUXIN-UP RNA-RELATED 24 109 - -
Lja1g4336 144 Pfam Auxin responsive protein 21 90 IPR003676 GO:0009733
Lja1g4336 144 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 24 109 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4336 Lja-Chr1 56022927 56023361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4336 13 90 Calmodulin-binding Proteins AT4G34750 43.373 1.63e-17 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4336 K14488 - gmx:100789525 155.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4336 1 56022927 56023361 Lja1g4336 1 56022927 56023361 ECH