Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4335 ATGTCTAACATTGGGATTAATGTAAGACAAGGAGAACCAACTAGAGTTCATCCTGCAGAGGAAACAGAAAAGGGGCTGTACTTCCTTTCAAACCTTGACCAGAACATTGCGGTTCCGGTTCGCACTGTTTACTGCTTCAAATCATCTTCAAGAGGGAATGAGGATGCTGCACATGTTATCAGGGTTGCCTTGTCTAAGATTCTTGTCCCTTATTACCCTATGGCTGGGAAATTGGTTATCAGCACAGAAGGGAAGTTGATAGTGGATTGTAACACAATGGAGGGTGCTGTCTTTGTTGAGGCTGAAGCAGATTGTGACATAGAAGACATAGGAGACTTAACAAAGCCAGACCCTGATTCTCTTGGGAAACTGATTTATAACACCCCTGGTGCTAGGAGCATACTTGAGATGCCTCTCATGACAGTTCAGGTGACAAAGTTCAAATGTGGGGGATTTACTATGGGGCTAAACTTGATCCATTGCATGAAAGATGGACTAAGTGCTATGGAGTTTGTGAATGCTTGGAGTGAGACAGCAAGAGATTTGGACTTAAAGACTCCACCATTTCTTGACAGAACCATCCTCAAAGCACGTGACCCTCCTATAATAGAGTTCAAACACCATGAATATGATGAAATTGTAGATCTATCAGATACTAAAAAACTCTATGAAGAAGAAAAGATGCTCTACAGATCCTTCTGTTTCGACCCCAAGAAGCTTGAATTGCTCAAGAAAAAGGCCACTGAAGATGGGGTTGTGAAAAAGTGCTCAACTTTTGAAGCACTCTCAGGATTTGTATGGAGAGCTAGAACTGAAGCCTTGAAGATGGAACCTGATCAGAAAACAAAGCTTCTCTTTGCAGTGGATGGAAGAACTAGATTTGTGCCTCCAATACCAGATAGATATTTTGGCAATGCTATTGTGCTTACACATTCTGTGTGTAAAGCAGGAGAGATTGTGGAGAATCCTCTGTCATTTTCTGTGGGATTGGTTCACAGTGCAATTGACATAGTCACAGATAGTTATATGAGATCTTCCATTGATTATTTTGAAGTTACAAGAGCTAGGCCTTCCTTAACAGCTACACTTTTGATCACAACATGGACTAGGTTGTCTTTCCACACTACAGATTTTGGCTGGGGCGAACCTTTGTGTTCTGGTCCTGTGACCTTGCCAGAGAAAGAAGTCATTTTGTTCTTGTCAAATGGTCAAGATAGGAAAAGCATAAATGTGCTTCTGGGATTGCCTGCTTCTGCCATGGAGACTTTTGAAGCACTGATGATGCAGGTGTGA 1293 0.42 MSNIGINVRQGEPTRVHPAEETEKGLYFLSNLDQNIAVPVRTVYCFKSSSRGNEDAAHVIRVALSKILVPYYPMAGKLVISTEGKLIVDCNTMEGAVFVEAEADCDIEDIGDLTKPDPDSLGKLIYNTPGARSILEMPLMTVQVTKFKCGGFTMGLNLIHCMKDGLSAMEFVNAWSETARDLDLKTPPFLDRTILKARDPPIIEFKHHEYDEIVDLSDTKKLYEEEKMLYRSFCFDPKKLELLKKKATEDGVVKKCSTFEALSGFVWRARTEALKMEPDQKTKLLFAVDGRTRFVPPIPDRYFGNAIVLTHSVCKAGEIVENPLSFSVGLVHSAIDIVTDSYMRSSIDYFEVTRARPSLTATLLITTWTRLSFHTTDFGWGEPLCSGPVTLPEKEVILFLSNGQDRKSINVLLGLPASAMETFEALMMQV* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4335 430 Gene3D - 213 430 IPR023213 -
Lja1g4335 430 Pfam Transferase family 12 425 - -
Lja1g4335 430 Gene3D - 4 212 IPR023213 -
Lja1g4335 430 PANTHER OMEGA-HYDROXYPALMITATE O-FERULOYL TRANSFERASE 7 428 - -
Lja1g4335 430 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 7 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4335 Lja-Chr1 56002958 56005460 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4335 6 430 Monolignol Biosynthesis Gene Families AT5G48930 35.973 5.49e-88 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4335 K15400 - gmx:100794490 728.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4335 1 56002958 56005460 Lja1g4335 1 56002958 56005460 ECH