Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4326 ATGGACTGGAATTTGAAGCCACATTCATGGGATTTTTCTGATGTGGATGAGGCAGCAACCTTGCCCAACGTAGAAACAATGGAAGATTCAAGCAGAATTGGAGTTCATAGGATGAAAGGGGTGTTTTCTGTTGACTTGAAGCTTGGTCAGGTGGGGAATTCTAGCACAGAACCAGCACTTCCCAAATCCAAAGATGCTGCTGCTGCTGAAGTCTCCAAAATGGGATCATCTTTTCCTTCAGGGTCTTCTAAGAGAGCTCGAGCCGTGAACAACGCGACCCTTACAGCGTTTTGCCTTGTGGATGGGTGCAGTTCTGATCTTAGTAATTGTAGAGATTATCATAGGCGCCATAAGGTCTGCGAACTTCATTCCAAGACCCCAGAGGTCACAATTGGTGGCATGAAGCAAAGGTTCTGCCAACAATGTAGCAGGTTCCACTCGCTGGACCAATTTGATGAAAGAAAAAGAAGCTGCAGGAAACGTTTAGATGGACACAACCGACGTAGAAGAAAGCCTCAGCCAGAACCTCTCAAAGGACCGGGTAGTTTTTTGTCCAGTTACCAAGGAAGTCAGTTGCTACCCTTCTCAAGTTCCACTGCTATGGTGAATCCAGGTTGGAGTGGTGGACTTGTTACTTCCAATGCAGGTGGTAGGCTTCACAACCACAACCAGCACCAACAAGTGCAGCATTTGGTTGATGAACGAGATTTTTTTCTTGGATCTTCTCCAACAAGCTACAAAGAAGAGAAGCAACTCTCATTCTTACACAATGACAATCCCTCCTCTACCACAATTGATAACCAACTTTCAGCTGCTTCTGTGAGCCACTTGCTTCTCAGGACAAGTTCAGTTCAGGACTCCCCTTGTGCTCTCTCTCTTCTGTCATCATCATATTCATCACAGACTCACGCACCTGGAAATGGTTTGGATCAAATGGTGCAGCCTCACGCAATGTCAATGTCCCTTATGGAGCCATTAGGCCTGAGCCTGCATGATAATAACAGCAGCTTAGAGTCCATGGACCCAGTCTTGGTTCATAGTGGGAGTGACCATTGTTCCTCAATGTATAACATGGGTTCTGATGGATCCCAGAGCAATGAAGCCCCTCAACTATTTCCTTTTCAATGGGAATAA 1134 0.4594 MDWNLKPHSWDFSDVDEAATLPNVETMEDSSRIGVHRMKGVFSVDLKLGQVGNSSTEPALPKSKDAAAAEVSKMGSSFPSGSSKRARAVNNATLTAFCLVDGCSSDLSNCRDYHRRHKVCELHSKTPEVTIGGMKQRFCQQCSRFHSLDQFDERKRSCRKRLDGHNRRRRKPQPEPLKGPGSFLSSYQGSQLLPFSSSTAMVNPGWSGGLVTSNAGGRLHNHNQHQQVQHLVDERDFFLGSSPTSYKEEKQLSFLHNDNPSSTTIDNQLSAASVSHLLLRTSSVQDSPCALSLLSSSYSSQTHAPGNGLDQMVQPHAMSMSLMEPLGLSLHDNNSSLESMDPVLVHSGSDHCSSMYNMGSDGSQSNEAPQLFPFQWE* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4326 377 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 16 377 IPR044817 GO:0003677
Lja1g4326 377 MobiDBLite consensus disorder prediction 159 183 - -
Lja1g4326 377 SUPERFAMILY SBT domain 96 177 IPR036893 GO:0003677|GO:0005634
Lja1g4326 377 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 16 377 - -
Lja1g4326 377 Gene3D - 89 159 IPR036893 GO:0003677|GO:0005634
Lja1g4326 377 Pfam SBP domain 98 171 IPR004333 GO:0003677
Lja1g4326 377 MobiDBLite consensus disorder prediction 357 377 - -
Lja1g4326 377 ProSiteProfiles Zinc finger SBP-type profile. 95 172 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4326 Lja-Chr1 55809998 55813611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4326 1 377 SBP-box Gene Family AT5G50670 42.105 3.01e-69 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lja1g4326 SBP 4.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4326 - - gmx:100787407 449.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4326 1 55809998 55813611 Lja1g4326 1 55809998 55813611 ECH
Lja4g0459 4 3708260 3712362 Lja1g4326 1 55809998 55813611 PCT