Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4317 ATGGACAACAACCACCAGGCCCAATCGGCGCCGTCGTACCCACCAACCGGCACTCCGCCGCCGCCACCACCACCACCCAACGCCGCTCCTCCAGCCCCATTTCACCACCTCCTCCAGCAGCAACAGCAGCAGCTTCAGATGTTCTGGACCTACCAACGCCAAGAGATCGAGCACGTCAACGACTTCAAGAACCACCAGCTCCCTCTCGCTCGCATCAAGAAGATCATGAAGGCCGACGAAGATGTCCGCATGATCTCCGCCGAAGCACCCATCCTCTTCGCCAAGGCATGCGAGCTTTTCATCCTTGAACTCACCATCCGATCCTGGCTTCACGCCGAGGAGAACAAGCGCCGCACGCTTCAGAAGAATGATATCGCTGCTGCGATTACTCGCACCGACATTTTCGACTTCCTGGTTGATATCGTTCCTAGGGATGAGATCAAGGAGGAAGCGTCGCTCGTCGCCGCCGCTGCTAGCGGCGTTCCGTACTACTACCCGCCCATGGGACAGCCTGCTGGGATGATGATTGGCCGCCCTGCGATGGATCCTGCTACTGGGGTGTATGTTCAGCCACCATCACAGGCTTGGCAGTCTGTTTGGCAGACTGCCGCCGATGACGGCTCTTACGGCACCGCCGGCACCAGTGGGCAGCCCAATCTCGACGGTTCTCAGAGCTGA 678 0.5929 MDNNHQAQSAPSYPPTGTPPPPPPPPNAAPPAPFHHLLQQQQQQLQMFWTYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKEEASLVAAAASGVPYYYPPMGQPAGMMIGRPAMDPATGVYVQPPSQAWQSVWQTAADDGSYGTAGTSGQPNLDGSQS* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4317 225 SUPERFAMILY Histone-fold 33 138 IPR009072 GO:0046982
Lja1g4317 225 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 223 - -
Lja1g4317 225 MobiDBLite consensus disorder prediction 13 32 - -
Lja1g4317 225 Gene3D Histone, subunit A 34 144 IPR009072 GO:0046982
Lja1g4317 225 Pfam Core histone H2A/H2B/H3/H4 54 129 IPR007125 GO:0003677
Lja1g4317 225 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 1 223 - -
Lja1g4317 225 MobiDBLite consensus disorder prediction 1 33 - -
Lja1g4317 225 MobiDBLite consensus disorder prediction 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4317 Lja-Chr1 55704097 55707928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4317 13 207 CCAAT-HAP5 Transcription Factor Family AT5G63470 79.439 3.04e-106 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lja1g4317 CBFD_NFYB_HMF 2.3e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4317 - - gmx:100818447 347.051