Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4308 ATGGAAACTCACAGTGAGAATCACAGAGATCGCAGGCTAGAAGCTCTCGGAGATCTTCGAGTCCTTCCCGATGAAATCCTCTGCGCCATTCTGGAACGTCTCACTCCACGAGATGCAGCTCGAATCGCCTGCGTTAGCAGTGTGATGTACATACTGTGCAATGAAGAACCACTGTGGATGACTCTGTGTCTAAAAGGAGCTTCTGGTTTGCTTCAATATAAAGGCTCTTGGAAGAAAACTGCTCTGCTGCATAATGAGAATCTTCCGGTCGAAGACACCGAGTTCCGTCAACCACATTTATATTTTGATGGGTTCAACTCTTTATATTTGTACAGGAGGTTATACCGATGTCATACCAAATTGGATACATTTGGCAGAGATGACGGAAATGTGGAAAGAGTAACAGACATATCGTTGACGGATTTCTATGACAAATATGACGCGAAGAAACCGGTTATGCTTACTGGATTGGCTGATACATGGCCTGCCAGGCACAAATGGACAACGGATCAGCTGTTGCTAAATTATGGAGATGTAGCATTTAAAATTTCTCAAAAGAGTTCCCGGAAGATCACCATGAAGTTCAAGGATTATGTCACATACATGAAAGTTCAGCATGATGAAGATCCCTTATATATTTTTGATGAAAAGTTTGGAGAAGTTGCACCTAGCTTATTGAAGGATTATTGCGTGCCTCATCTTTTCCAAGAAGACTTCTTTGATATCTTAGATACAGATAAACGACCATCCTATAGATGGCTCATTATTGGACCAGAGAGATCTGGTGCCTCTTGGCATGTTGATCCAGCTCTTACCAGTGCATGGAACACTCTTCTTTCTGGCCGTAAAAGGTGGGCATTATATCCTCCTGGTAAGGTGCCTTTGGGTGTGACAGTGCATGTTAATGAAGAAGATGGTGATGTCAGTGTTGAGACTCCATCATCAGTGCAGTGGTGGCTAGATTATTATCCTCTTCTTGCTGATGAAGACAAGCCAATTGAGTGTACACAACTGCCAGGAGAGACAATTTATGTTCCAAGTGGATGGTGGCACTGTGTTCTAAATTTGGAAACAACTATTGCAGTCACACAGAATTTTGTGAATTCTAATAACTTCGAGTTTGTGTGTTTGGATATGGCACCTGGTTATCGTCACAAAGGAGTTTGCCGTGTTGGTCTGCTTGCTCTAGATGAAGAACGTTATGAAAATATCAGGGAGAACATGTCATGTAATGAAGAAAACTTATGTTACTCTGATTTGTCAAGAAAAGAGAAAAGAGCCAAAACTCATAAAGATGCAGATGATTTATATTGTGAAAATGGTGTATCTAGAAACTATAATTTATGGAAAGATGGATTTTCCTATGATATAAATTTCTTATCCATGTTTTTGGATAAGGATAGGGACCACTACAGTTCCTTGTGGAGCTCAGGCAACAGCATTGGGCAACGAGAGTTAAGAGAATGGCTATCCAAGCTTTGGATTAGAAAACCGAAAATGAGAGATCTAATATGGAAGGGAGCGTGCATTGTAATAAATGCTGACAAGTGGTTAGATTGCGTATCAAAAATTTGTGCCGTCCACAATTTGCGCCTTCCCACTGATGATGAAAGGCTTCCTGTTGGTACGGGTAGCAATCCTGTTTATCTGGTCGGAAACTCTGTTGTTAAAATTTTTGTCGAAGGAGGACTGGAAGCTTCACTTTATTGTTTAGGCACTGAGCTAGAGTTTTACAGTCTGCTGCATGAAGCTAACTCCTCTCTGAAGAAACATATGCCTAATGTTTTGGCCAGTGGGATTGTTTATCTTGAAGATGGATCTTATACCAATTTAAATTGGGATGGAAAAGGAATCCCTGATGTCATTGCGAAGAGCAATCTTATCAGGAAGAAATGTGACGTTGATAGTTTCTCATTTGGAGTATGGGGAAAGAAGCAGTTAGAGTATAGGAACGCTGGTATGCCGGTTGATGGATCAGTTAGTTTAGATGGTGACACAAGCATATGGCCATATATGATAACAAAGCGATGTGATGGGAATATGTTTGCAGAGTTGAGAGACAGATTATCATGGGAAGATACAACAAACTTGGCCTCCTTTCTGGGGGAGCAACTGCGCCACCTTCATCTTTTGCCACATCCAACATTAAATATTTCATCTTGCTCTGATATTGAACATGATATAAGCTTGCCTGATGATAATAGTTGTGCTGCAACTGTTAATCGTAATTCAAACGCTGCAGTAGAATGGGGAATCTTCTCCAGAACCTTAACAAAGAAGAGGAACAGTGTCTCAAGCCGCTTGACCAAGTGGGGAGATCCAATTCCTAGCAAACTGATAGAGAAAATTGATGAATATATCCCCCATGATTTTGCTAAGCTGCTAAATATATCTAAGAGTTTCGCAAGTGCTGCTTTTAAAACTTGCTCCTGGATACACACTGACATTATGGATGATAACATTTACATGGAACCATCATCAGTGTGCTCTACCTCCAATGGGAGTTCTGAAGATGCTGCCCTGGTGGACAATGGGTTGTTGAGTGACCATGATGAAGTGAAATCCTGGCGTCCTAGTTACATTCTTGATTTCAGTGATCTTTCTATAGGTGATCCTATTCTTGACTTGATACCACCTTATTTAGATGTGTTTAGAGGTGATTCAAATCTCCTGAAGCGATTTTTAGAAAGTTACAAACTTCCTTTTCCTAGTAACATAGGGAATTCCGAGTCAACAGATGGTGGTCAAAAGTTTAGCCGACTCTCATATATTGCCATGTGCTATTGTATTTTGCATGATGACAATGTCTTGGGAGCTATTTTTAGCATATGGGAAGAACTGAGATCAGCAGAATCATGGGAAGAAGTTGAGCTGAAAGTTTGGGGGGAGTTGAACAATTACAAAGGCTTTCCTTGA 2916 0.4078 METHSENHRDRRLEALGDLRVLPDEILCAILERLTPRDAARIACVSSVMYILCNEEPLWMTLCLKGASGLLQYKGSWKKTALLHNENLPVEDTEFRQPHLYFDGFNSLYLYRRLYRCHTKLDTFGRDDGNVERVTDISLTDFYDKYDAKKPVMLTGLADTWPARHKWTTDQLLLNYGDVAFKISQKSSRKITMKFKDYVTYMKVQHDEDPLYIFDEKFGEVAPSLLKDYCVPHLFQEDFFDILDTDKRPSYRWLIIGPERSGASWHVDPALTSAWNTLLSGRKRWALYPPGKVPLGVTVHVNEEDGDVSVETPSSVQWWLDYYPLLADEDKPIECTQLPGETIYVPSGWWHCVLNLETTIAVTQNFVNSNNFEFVCLDMAPGYRHKGVCRVGLLALDEERYENIRENMSCNEENLCYSDLSRKEKRAKTHKDADDLYCENGVSRNYNLWKDGFSYDINFLSMFLDKDRDHYSSLWSSGNSIGQRELREWLSKLWIRKPKMRDLIWKGACIVINADKWLDCVSKICAVHNLRLPTDDERLPVGTGSNPVYLVGNSVVKIFVEGGLEASLYCLGTELEFYSLLHEANSSLKKHMPNVLASGIVYLEDGSYTNLNWDGKGIPDVIAKSNLIRKKCDVDSFSFGVWGKKQLEYRNAGMPVDGSVSLDGDTSIWPYMITKRCDGNMFAELRDRLSWEDTTNLASFLGEQLRHLHLLPHPTLNISSCSDIEHDISLPDDNSCAATVNRNSNAAVEWGIFSRTLTKKRNSVSSRLTKWGDPIPSKLIEKIDEYIPHDFAKLLNISKSFASAAFKTCSWIHTDIMDDNIYMEPSSVCSTSNGSSEDAALVDNGLLSDHDEVKSWRPSYILDFSDLSIGDPILDLIPPYLDVFRGDSNLLKRFLESYKLPFPSNIGNSESTDGGQKFSRLSYIAMCYCILHDDNVLGAIFSIWEELRSAESWEEVELKVWGELNNYKGFP* 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4308 971 Pfam Cupin-like domain 148 370 IPR041667 -
Lja1g4308 971 Pfam F-box-like 21 65 IPR001810 GO:0005515
Lja1g4308 971 Gene3D - 10 88 - -
Lja1g4308 971 ProSiteProfiles F-box domain profile. 16 62 IPR001810 GO:0005515
Lja1g4308 971 ProSiteProfiles JmjC domain profile. 220 383 IPR003347 -
Lja1g4308 971 SUPERFAMILY Protein kinase-like (PK-like) 669 902 IPR011009 -
Lja1g4308 971 Gene3D Cupin 115 368 - -
Lja1g4308 971 PANTHER JMJC DOMAIN-CONTAINING PROTEIN 8 5 904 - -
Lja1g4308 971 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 5 904 - -
Lja1g4308 971 SUPERFAMILY Clavaminate synthase-like 128 375 - -
Lja1g4308 971 SUPERFAMILY F-box domain 10 69 IPR036047 GO:0005515
Lja1g4308 971 SMART fbox_2 22 62 IPR001810 GO:0005515
Lja1g4308 971 SMART fbox_2 775 814 IPR001810 GO:0005515
Lja1g4308 971 SMART cupin_9 211 378 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4308 Lja-Chr1 55579297 55588515 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4308 8 967 Glycosyltransferase AT1G78280 60.718 0.0 1188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lja1g4308 Cupin_8 3.7e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4308 - - gmx:100792541 1682.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4308 1 55579297 55588515 Lja1g4308 1 55579297 55588515 ECH