Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4294 ATGGCGCTGCTACGTGTTCTGTGTTTAACTTCTTCAACAACAACAACTCACATATCCACACAAAACCATTCACCCTCTTTCTCATCCCTTGAGATTCACCACAAGAAGAACAACAACAAACCTTACTCCCAATCTTCATCTCACAACCACTCCACCAAGCTCACTTTTTGCCACATACCCTTTTCGTTTCGCCTTCCATGTCTATCAATCACGCACAGTACCAGAGCCAACACTCTCACATTCGCTTCTTCCACTACCCAACAACAACAAACCGAGGAAGCCACCACTGAAGAATTTTCTACAACCAGGTTGGTTGCTCAGAACGTGCCATGGACAAGTACCCCTGAAGATGTTCGGTCTTTGTTTGAGAGATATGGAACGGTTCTCGAAGTTGAGCTTTCTATGTATAACAAGACCAGAAGTAGGGGTTTGGCGTTTGTTGAAATGAGCTCCCCAGAAGAGGCTCTTGAGGCTCTCAACAAGCTCGAATCGTATGAGTTTGAGGGTCGCGTATTAAAACTCAACTATGCTCGACCAAAAAAGAAGAAAGCGCCGCCACCCGTAGTGCAACGGAAGCCAGTAACATTTAACTTGTTTGTTGCAAACTTGTCCTATGAAGCGACGTCTAAAGATCTCAGGGAGTTTTTTGACTCAGGAAGTAGTCAAGTTGTTTCTGCAGAGGTTGTATTTCATGAGGACCCTAGAAAATCAACTGGTTATGGATTTGTGTCCTTCAAGTCCAAGAAAGAAGCCAATGCAGCTCTTTCTGAGTTCCAAGAAAAGACTTTTATGGGAAGGTCACTCAGGGTAGCGCCTAGTAAGCGATTTGTTCAACCACTTGAAGAGAGCAGTGCAAAACCTGAAGATACATCTACTGAGTTGAGCGTGAATGGGGCAGGAGTTGACAATGCTGATTGA 918 0.4455 MALLRVLCLTSSTTTTHISTQNHSPSFSSLEIHHKKNNNKPYSQSSSHNHSTKLTFCHIPFSFRLPCLSITHSTRANTLTFASSTTQQQQTEEATTEEFSTTRLVAQNVPWTSTPEDVRSLFERYGTVLEVELSMYNKTRSRGLAFVEMSSPEEALEALNKLESYEFEGRVLKLNYARPKKKKAPPPVVQRKPVTFNLFVANLSYEATSKDLREFFDSGSSQVVSAEVVFHEDPRKSTGYGFVSFKSKKEANAALSEFQEKTFMGRSLRVAPSKRFVQPLEESSAKPEDTSTELSVNGAGVDNAD* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4294 305 SMART rrm1_1 103 175 IPR000504 GO:0003723
Lja1g4294 305 SMART rrm1_1 197 271 IPR000504 GO:0003723
Lja1g4294 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 173 IPR000504 GO:0003723
Lja1g4294 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 269 IPR000504 GO:0003723
Lja1g4294 305 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 1 302 - -
Lja1g4294 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 275 IPR000504 GO:0003723
Lja1g4294 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 179 IPR000504 GO:0003723
Lja1g4294 305 MobiDBLite consensus disorder prediction 275 305 - -
Lja1g4294 305 SUPERFAMILY RNA-binding domain, RBD 186 277 IPR035979 GO:0003676
Lja1g4294 305 PANTHER OS08G0483200 PROTEIN 1 302 - -
Lja1g4294 305 SUPERFAMILY RNA-binding domain, RBD 88 187 IPR035979 GO:0003676
Lja1g4294 305 Gene3D - 184 278 IPR012677 -
Lja1g4294 305 Gene3D - 73 183 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4294 Lja-Chr1 55303032 55305604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4294 104 269 Eukaryotic Initiation Factors Gene Family AT3G16380 26.163 3.97e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4294 - - gmx:100790439 306.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4294 1 55303032 55305604 Lja1g4294 1 55303032 55305604 ECH