Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja1g4292 | ATGGCATTTGAGGCTGTGGTTTTCCCACAAGATCCTGCATTCACATATGGTTGCAAAAATGATTACTTTTTCTCTGCAACAACTGCTGTTGGAGCATGGGGCACCAACAACAACAACTATGGTCTCCTCCAAGCAGCAGAAGAAGAAGAAGAAAAAAAACTCCTTGAAATCATCATCAACAACAACAACATGGACCAGGAGCAGAATCTCCATTCAAATAATTGGGATTCTTCTTCCCACACATCCCCTGAAGCCTGCACCTTTGATCAATCATCTCCTACACCATTTTCTTCTTCTCGGCGAAAACGACGTCGCACCAAGAGCGCCAAGAACATGGAAGAAATCGAGAATCAGAGGATGACCCACATCGCGGTTGAACGAAACCGCCGCAAACAGATGAACGAGTACCTTTCTGCGCTAAGATCTTTGATGCCTTCTTCTTATGTTCAAAGGGGTGACCAAGCGTCTATTATTGGAGGTGCTATTAACTTTGTGAAGGAGTTAGAGCAACTATTACAATCCATGGAAGGGCAAAAGAAAACGGACCAGCCAGGCTCATCACCACTGCCACCATTTGCTGAGTTCTTCGTGTTTCCTCAGTACACGACGCGTGCTGCAACTCATAGCAACGATACGAACATGGGCGTAGCAGACATTGAGGTTACTTTGGTGGATAGCCATGCCAATTTGAAGATACTTTCGAAGAAACGAAGAGGAAACCTCATGAAGATCATTGGTGGGATTCAAAGTCTCAGTCTCACAATTCTTCATCTTAATGTTACCACTGTGGATGATTTAGTCCTTTACTCAGTGAGTCTCAAGGTAGAGGAGGAGTGTCAGCTGAGCACGGTGGATGAAATAGCGGCCGCCGTGAATCAACTATTATCCATGGTCGGAGAAGAAGTGACTTTCAGTTGA | 918 | 0.4499 | MAFEAVVFPQDPAFTYGCKNDYFFSATTAVGAWGTNNNNYGLLQAAEEEEEKKLLEIIINNNNMDQEQNLHSNNWDSSSHTSPEACTFDQSSPTPFSSSRRKRRRTKSAKNMEEIENQRMTHIAVERNRRKQMNEYLSALRSLMPSSYVQRGDQASIIGGAINFVKELEQLLQSMEGQKKTDQPGSSPLPPFAEFFVFPQYTTRAATHSNDTNMGVADIEVTLVDSHANLKILSKKRRGNLMKIIGGIQSLSLTILHLNVTTVDDLVLYSVSLKVEEECQLSTVDEIAAAVNQLLSMVGEEVTFS* | 306 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja1g4292 | 305 | Pfam | Helix-loop-helix DNA-binding domain | 118 | 169 | IPR011598 | GO:0046983 | |
Lja1g4292 | 305 | MobiDBLite | consensus disorder prediction | 68 | 110 | - | - | |
Lja1g4292 | 305 | CDD | bHLH_AtFAMA_like | 120 | 191 | - | - | |
Lja1g4292 | 305 | SMART | finulus | 123 | 174 | IPR011598 | GO:0046983 | |
Lja1g4292 | 305 | PANTHER | HELIX-LOOP-HELIX-LIKE PROTEIN | 1 | 303 | - | - | |
Lja1g4292 | 305 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 117 | 190 | IPR036638 | GO:0046983 | |
Lja1g4292 | 305 | MobiDBLite | consensus disorder prediction | 68 | 97 | - | - | |
Lja1g4292 | 305 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 117 | 168 | IPR011598 | GO:0046983 | |
Lja1g4292 | 305 | PANTHER | MAX DIMERIZATION, MAD | 1 | 303 | - | - | |
Lja1g4292 | 305 | Gene3D | - | 107 | 183 | IPR036638 | GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja1g4292 | Lja-Chr1 | 55281667 | 55283335 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lja1g4292 | 1 | 275 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT1G72210 | 47.267 | 8.72e-73 | 225 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Lja1g4292 | HLH | 1.7e-10 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lja1g4292 | - | - | gmx:100805420 | 348.206 |