Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4292 ATGGCATTTGAGGCTGTGGTTTTCCCACAAGATCCTGCATTCACATATGGTTGCAAAAATGATTACTTTTTCTCTGCAACAACTGCTGTTGGAGCATGGGGCACCAACAACAACAACTATGGTCTCCTCCAAGCAGCAGAAGAAGAAGAAGAAAAAAAACTCCTTGAAATCATCATCAACAACAACAACATGGACCAGGAGCAGAATCTCCATTCAAATAATTGGGATTCTTCTTCCCACACATCCCCTGAAGCCTGCACCTTTGATCAATCATCTCCTACACCATTTTCTTCTTCTCGGCGAAAACGACGTCGCACCAAGAGCGCCAAGAACATGGAAGAAATCGAGAATCAGAGGATGACCCACATCGCGGTTGAACGAAACCGCCGCAAACAGATGAACGAGTACCTTTCTGCGCTAAGATCTTTGATGCCTTCTTCTTATGTTCAAAGGGGTGACCAAGCGTCTATTATTGGAGGTGCTATTAACTTTGTGAAGGAGTTAGAGCAACTATTACAATCCATGGAAGGGCAAAAGAAAACGGACCAGCCAGGCTCATCACCACTGCCACCATTTGCTGAGTTCTTCGTGTTTCCTCAGTACACGACGCGTGCTGCAACTCATAGCAACGATACGAACATGGGCGTAGCAGACATTGAGGTTACTTTGGTGGATAGCCATGCCAATTTGAAGATACTTTCGAAGAAACGAAGAGGAAACCTCATGAAGATCATTGGTGGGATTCAAAGTCTCAGTCTCACAATTCTTCATCTTAATGTTACCACTGTGGATGATTTAGTCCTTTACTCAGTGAGTCTCAAGGTAGAGGAGGAGTGTCAGCTGAGCACGGTGGATGAAATAGCGGCCGCCGTGAATCAACTATTATCCATGGTCGGAGAAGAAGTGACTTTCAGTTGA 918 0.4499 MAFEAVVFPQDPAFTYGCKNDYFFSATTAVGAWGTNNNNYGLLQAAEEEEEKKLLEIIINNNNMDQEQNLHSNNWDSSSHTSPEACTFDQSSPTPFSSSRRKRRRTKSAKNMEEIENQRMTHIAVERNRRKQMNEYLSALRSLMPSSYVQRGDQASIIGGAINFVKELEQLLQSMEGQKKTDQPGSSPLPPFAEFFVFPQYTTRAATHSNDTNMGVADIEVTLVDSHANLKILSKKRRGNLMKIIGGIQSLSLTILHLNVTTVDDLVLYSVSLKVEEECQLSTVDEIAAAVNQLLSMVGEEVTFS* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4292 305 Pfam Helix-loop-helix DNA-binding domain 118 169 IPR011598 GO:0046983
Lja1g4292 305 MobiDBLite consensus disorder prediction 68 110 - -
Lja1g4292 305 CDD bHLH_AtFAMA_like 120 191 - -
Lja1g4292 305 SMART finulus 123 174 IPR011598 GO:0046983
Lja1g4292 305 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 303 - -
Lja1g4292 305 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 117 190 IPR036638 GO:0046983
Lja1g4292 305 MobiDBLite consensus disorder prediction 68 97 - -
Lja1g4292 305 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 117 168 IPR011598 GO:0046983
Lja1g4292 305 PANTHER MAX DIMERIZATION, MAD 1 303 - -
Lja1g4292 305 Gene3D - 107 183 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4292 Lja-Chr1 55281667 55283335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4292 1 275 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 47.267 8.72e-73 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja1g4292 HLH 1.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4292 - - gmx:100805420 348.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4292 1 55281667 55283335 Lja1g4292 1 55281667 55283335 ECH
Lja1g5993 1 110596115 110598740 Lja1g4292 1 55281667 55283335 PCT