Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4291 ATGACCACTCTCACACTCAAAAAACCACACCGCCACAGTTTCAACCACAGTCATGGCCTTCACTCCCTCCTCCTCATCCTCCTCCTCCTCATGCTCCCTCCGCCGCCGGCCACCGCACAGCTACCAAACGTACTCTCCCCACCACCAACAGACAAGCTCTCCGGACTCAAGTTCGACAAGTCCATGGCCATCGTCCTCGTGATCCTCGTGGTCGTGTTCTTCATGCTGGGCTTCCTCTCCATCTACACGCGCCAGTGCACGGAGCGTGGGATAAGAGGGAGGTTCGACCTCGCCTTCCCCATCGGCGGCAGCAACTGGCGCCACCGCGGACTCGACCCGGAGATCATCGATTCCTTCCCCACCTTCGTCTACTCCGCCGTGAAGGGACTCAAAATCGGAAGGGCCACGCTGGAATGCGCCGTGTGCTTGAACGAGTTTCGCGACCATGAAACGCTGCGTTTGATTCCGAAGTGCAGTCATGTCTTCCACGCCGAATGCGTCGACGCTTGGCTGGTGAACCAGTCTACCTGCCCCGTTTGCAGAGCAAACCTTCTTCAGGGAGACGCTGCTACTACCTTCGTGGCGGTTCAGATTCCAGATCCGGAAGGTCACGGGTCAACAACACCAGTACCCGGTTCAGGTGACCCGTCACCCAATAGAGTTGATAACAGTAGTAATAATCAATCGCCTAAGGTGGGTAGTGATTTGGTTAATCAGAACCGTCCGGTTCGGTCGAGGTCAACCGGGTTTAGGAGCTGGTTTCCGCGGTCGCATTCCACAGGTCACTCGTTGGGTGAGGATTGGGAGCGGTTCACACTGAGGTTACCAGAGGAGGTGCGGAACCGGTTGGTTAATTCCACGCTGAACCGGACCACTAGTTGTGGCGCCACGTTTATGCGGGTGAGCAGTGGGAGGAGCGGTTATAGGGCGAGGAGTGTCGGTAGGAGCCCGATTGGTGGGAGCAATGAGCGGTCAGACCGACGATTCTTTTGGACTCCACCGTTTGTGAGCCGAGCGGGTTCAACCAGGTCGCCGAAGCCTAATAAGGCAATGGATGATATGGGGGAACGATCTTCAGATCGTCTATTCACTGGTGGTGAGGGTTAA 1107 0.5664 MTTLTLKKPHRHSFNHSHGLHSLLLILLLLMLPPPPATAQLPNVLSPPPTDKLSGLKFDKSMAIVLVILVVVFFMLGFLSIYTRQCTERGIRGRFDLAFPIGGSNWRHRGLDPEIIDSFPTFVYSAVKGLKIGRATLECAVCLNEFRDHETLRLIPKCSHVFHAECVDAWLVNQSTCPVCRANLLQGDAATTFVAVQIPDPEGHGSTTPVPGSGDPSPNRVDNSSNNQSPKVGSDLVNQNRPVRSRSTGFRSWFPRSHSTGHSLGEDWERFTLRLPEEVRNRLVNSTLNRTTSCGATFMRVSSGRSGYRARSVGRSPIGGSNERSDRRFFWTPPFVSRAGSTRSPKPNKAMDDMGERSSDRLFTGGEG* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4291 368 PANTHER RING-H2 FINGER PROTEIN ATL11 22 301 - -
Lja1g4291 368 PANTHER RING FINGER DOMAIN-CONTAINING 22 301 - -
Lja1g4291 368 SMART ring_2 139 180 IPR001841 -
Lja1g4291 368 MobiDBLite consensus disorder prediction 199 242 - -
Lja1g4291 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 186 IPR013083 -
Lja1g4291 368 MobiDBLite consensus disorder prediction 334 368 - -
Lja1g4291 368 SUPERFAMILY RING/U-box 123 186 - -
Lja1g4291 368 CDD RING-H2_EL5_like 138 181 - -
Lja1g4291 368 MobiDBLite consensus disorder prediction 210 242 - -
Lja1g4291 368 MobiDBLite consensus disorder prediction 349 368 - -
Lja1g4291 368 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Lja1g4291 368 Pfam Ring finger domain 138 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4291 Lja-Chr1 55235454 55237244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4291 23 339 Rapid Response to Elicitors AT3G05200 40.000 6.91e-57 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4291 K10664 - gmx:100815982 348.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4291 1 55235454 55237244 Lja1g4291 1 55235454 55237244 ECH
Lja1g5997 1 110712375 110714723 Lja1g4291 1 55235454 55237244 PCT