Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4279 ATGAGGAAGAAGAGAAAAGGAAGTGGGGCTGATGCGTCTGAGGAGAATCCTGTTATTTTGGCTGCTTCCAGTCATGGCTCGAATTGGAGGTCGCATTACTCGCTCGAAGATTGTTCTAGGTTGAAGAAGAGGTGTAAGGAAGATGCAGAGGCTGAGCTTGCTTCTTCTTATAAGAGTAGGCTTGCTGGCATTGCTACCGCGCCGCCGTGTGGGACGTCGTCGCTGATCACGCCGGGAAGAGGGCTCAAGAGGAAGATAGGTTGTATTGATGTTGCTACGCAGATGGGCAGGAAGAAGAAGATTGAGGATGATTATGTTATGTGCGAAACGATCGGGCAAGGGAAGTTTGGATCGGTCTGGCTGTGTCGGTCGAGGGTTAGTGGAGCGGAGTTTGCTTGTAAGACTTTGAAGAAAGGGGAGGAGACGGTTCATCGGGAGGTTGAGATCATGCAGCACTTGTCTGGACATTCCGGGGTCGTGACGCTGCAAGCGGTTTATGAAGAAGCTGATTGCTTTCATCTCGTGATGGAGTTGTGCTCCGGTGGACGACTGATTGATCAAGTGGTTAGCGACGGCCCGTATTCGGAGCAGCGGACTGCTAATTTAATCAAGGAAGTGATGTTAGTCGTCAAGTATTGTCATGACATGGGAGTTGTGCACAGAGATATCAAACCTGAGAATATTCTGCTCACGGCATCGGGAAAATTAAAACTTGCAGATTTTGGCCTGGCAATGAGAATTTCAGAAGGTCAGAACTTGACTGGTTTGGCTGGAAGCCCTGCATATGTTGCCCCAGAAGTATTGTTGGGAAAATACTCTGAGAAGGTTGATATATGGAGTGCTGGAGTGCTCCTGCATGTTCTGTTGGTTGGCAGTCTTCCTTTTCAAGGAGATTCATTAGAAGCTGTTTTTGAGGCTATTAAGACAGTCAAATTAGATTTCCAAGCGGGGATGTGGGAGTCAATATCTAAACCTGCACGTGACCTTCTTGGGAGAATGCTGACAAGGGATACTTCAGCAAGGATATCAGCTGATGAAGTACTTCGACATCCATGGATTTTGTTCTACACCGCACAGACATTGAAGATGCTGCCTATCAAAACAAAAACGAAGCACCAAATTGGTGCTGCATGCGGACAGCATATCACTGCAACTGAACATAGGTTTAGAGGAGACAGGATAGATAATGGCTCACTTGGAGAGGAACTCTCATCTTCTGAAAGTTACAATTCAGATGACAAGGAAGAATGTGTTTTGGTTGATGCGCTTGCCACAGCAATTTCACATGTGAGGATATCTGAACCAAAGAGAACCAGGTTGTGTGTTCCTACCGGCCCAATAGTGCAGGAAGGTTCATCTAACATGAAGGCTAACAATCTCTGTAAAGCATTTTGA 1395 0.4659 MRKKRKGSGADASEENPVILAASSHGSNWRSHYSLEDCSRLKKRCKEDAEAELASSYKSRLAGIATAPPCGTSSLITPGRGLKRKIGCIDVATQMGRKKKIEDDYVMCETIGQGKFGSVWLCRSRVSGAEFACKTLKKGEETVHREVEIMQHLSGHSGVVTLQAVYEEADCFHLVMELCSGGRLIDQVVSDGPYSEQRTANLIKEVMLVVKYCHDMGVVHRDIKPENILLTASGKLKLADFGLAMRISEGQNLTGLAGSPAYVAPEVLLGKYSEKVDIWSAGVLLHVLLVGSLPFQGDSLEAVFEAIKTVKLDFQAGMWESISKPARDLLGRMLTRDTSARISADEVLRHPWILFYTAQTLKMLPIKTKTKHQIGAACGQHITATEHRFRGDRIDNGSLGEELSSSESYNSDDKEECVLVDALATAISHVRISEPKRTRLCVPTGPIVQEGSSNMKANNLCKAF* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4279 464 ProSitePatterns Protein kinases ATP-binding region signature. 111 134 IPR017441 GO:0005524
Lja1g4279 464 SMART serkin_6 105 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4279 464 PANTHER SERINE/THREONINE-PROTEIN KINASE PEPKR2 22 456 - -
Lja1g4279 464 Gene3D Transferase(Phosphotransferase) domain 1 96 420 - -
Lja1g4279 464 ProSiteProfiles Protein kinase domain profile. 105 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4279 464 Pfam Protein kinase domain 106 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4279 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Lja1g4279 464 PANTHER SERINE/THREONINE-PROTEIN KINASE 22 456 - -
Lja1g4279 464 SUPERFAMILY Protein kinase-like (PK-like) 96 369 IPR011009 -
Lja1g4279 464 CDD STKc_CAMK 104 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4279 Lja-Chr1 55117652 55121975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4279 97 353 EF-hand Containing Proteins AT4G35310 43.820 1.13e-78 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lja1g4279 Pkinase 4.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4279 - - gmx:100812729 757.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4279 1 55117652 55121975 Lja1g4279 1 55117652 55121975 ECH