Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4264 ATGGCGGCCGTGAATCCACCACAGCCTCTGCAGTTCGAGGACCCTGCGATACCGCTCGACGACGACGACGGTGCTGCCGGTGATGATGATGATGCTATGGATGAGTTGGAGGAGGCGGATGTCAATCCAGTGAGCGTTGCAGTGAGTGCGAATCACGAAGCAGTTGTTTTGCCTTCGCGTACTAGTGAGCTCACTCTCTCTTTTGAGGGTGAGGTTTATGTCTTTCCCGCTGTCACACCTCAGAAGGTGCAAGCCGTTTTGCTGCTTTTGGGAGGACGTGATGTGCAGGCAAGCATGTCTACAGTTGAAGTACCACTTGATCAAAGTAACAGGGGGACGGATGGTAATCCAAAGCGTTCAAACCTTTCACGAAGAATAGCTTCCTTGGTCAGGTTCCGTGAAAAACGCAAGGAAAGATGTTTTGACAAGAAAATTAGGTACACCGTGAGAAAAGAGGTGGCACAGAGGATGCATCGGAAGAATGGCCAGTTTGCATCCTTGAAGGAAGGCCCAGGTTCATCTAATTGGGATTCTGCTCAGAGTTCTGGTCAAAATGGCACTCCTAATTCTGAATCTCTACGTAGATGTCAACATTGTGGTGTCAGTGAAAATAACACTCCTGCAATGCGCCGTGGCCCTGATGGACCTAGAACTTTATGCAATGCATGCGGCCTTATGTGGGCTAATAAGGGGACACTCAGAGTTCTCAGGAAAGGAGGAAGAAGTATTTCTGTTTTGCAAAGTGAACCGGACCTTTCTATTGATGTCAAGCCTACTGTTCTTCCAGGGGAATTGCCTGTCATCCAAGATGAGCAAGGTATTTCTGAAGATCCTTCTGAGGCCGTTGCTGCTGAAGTTTCTAACAATCGTGCTGTGAACCCCGGTGATGAGGAATTGCCTGAATCTGCAGATCACTTTAAGAACTCTCTGCCACTGGATATTAGTCATTCTTCGCCAAATGATGATGAGCAGGAACCTCTGGTTGAACTTTCTAATTCTTCAGACACAGATATTGACATTCCTGGAAGCTTTGATTAA 1038 0.475 MAAVNPPQPLQFEDPAIPLDDDDGAAGDDDDAMDELEEADVNPVSVAVSANHEAVVLPSRTSELTLSFEGEVYVFPAVTPQKVQAVLLLLGGRDVQASMSTVEVPLDQSNRGTDGNPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKEGPGSSNWDSAQSSGQNGTPNSESLRRCQHCGVSENNTPAMRRGPDGPRTLCNACGLMWANKGTLRVLRKGGRSISVLQSEPDLSIDVKPTVLPGELPVIQDEQGISEDPSEAVAAEVSNNRAVNPGDEELPESADHFKNSLPLDISHSSPNDDEQEPLVELSNSSDTDIDIPGSFD* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4264 345 ProSiteProfiles Tify domain profile. 57 92 IPR010399 -
Lja1g4264 345 MobiDBLite consensus disorder prediction 271 345 - -
Lja1g4264 345 MobiDBLite consensus disorder prediction 16 32 - -
Lja1g4264 345 PANTHER GATA TRANSCRIPTION FACTOR 28 1 345 IPR045280 GO:0006355
Lja1g4264 345 Gene3D - 188 245 IPR013088 GO:0006355|GO:0008270
Lja1g4264 345 SMART GATA_3 190 243 IPR000679 GO:0006355|GO:0043565
Lja1g4264 345 Pfam CCT motif 125 166 IPR010402 GO:0005515
Lja1g4264 345 ProSiteProfiles GATA-type zinc finger domain profile. 190 249 IPR000679 GO:0006355|GO:0043565
Lja1g4264 345 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 189 243 - -
Lja1g4264 345 SMART tify_2 57 92 IPR010399 -
Lja1g4264 345 ProSitePatterns GATA-type zinc finger domain. 196 223 IPR000679 GO:0006355|GO:0043565
Lja1g4264 345 MobiDBLite consensus disorder prediction 1 32 - -
Lja1g4264 345 MobiDBLite consensus disorder prediction 158 194 - -
Lja1g4264 345 CDD ZnF_GATA 195 242 IPR000679 GO:0006355|GO:0043565
Lja1g4264 345 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 1 345 - -
Lja1g4264 345 MobiDBLite consensus disorder prediction 167 194 - -
Lja1g4264 345 Pfam tify domain 59 91 IPR010399 -
Lja1g4264 345 MobiDBLite consensus disorder prediction 324 345 - -
Lja1g4264 345 Pfam GATA zinc finger 196 232 IPR000679 GO:0006355|GO:0043565
Lja1g4264 345 ProSiteProfiles CCT domain profile. 125 167 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4264 Lja-Chr1 54690176 54694920 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4264 7 238 Tify Gene Family AT1G51600 50.000 4.35e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lja1g4264 CCT 1.3e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4264 - - gmx:100801328 515.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4264 1 54690176 54694920 Lja1g4264 1 54690176 54694920 ECH