Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4263 ATGTACAGCTCCATGAACATCCCCGATCAGATCGAAGACAACGACGGCGAAAATCACATCCATTACGATTCCCATACCCTCGATGACGGTGGCGGTGGCGGTGGCGGAGTCGAAGATGTTTCCACCGACAACGCGTATGGTTCCGGTGGTGTAGGCCATGAATTGTCTATCCCGCCCTGCGATGATTCTAGCCAGCTCACGCTTTCGTTTCGGGGCCAAGTTTATGTATTTGATTCTGTCACGCCTGAAAAGGTTCAAGCAGTGTTGTTGCTTTTGGGAGGGTGTGAATTATCTTCTGGGTCGCAAGGTTTGGAGATATCGCCTACAAATCAGAGGGGTTCAGCGGAGTTTCCTGCGAAATGCAGTCTACCGCAGCGAGCAGCCTCGTTAATTAGGTTTCGTCAGAAGAGGAAAGAGCGGTGCTTTGATAAGAAAGTTAGATATGGTGTGCGTCAAGAAGTTGCGCTAAGGATGCAACGTAATAAAGGACAATTTACATCAGCTAAGAAACAAGATGGAACTAACAGTTGGGGTGCAGATCAAGATTCAGTTCAGGATTTAGTTCAATCAGAAACCTCGTGCACGCATTGTGGAACAAGTTCAAAATCCACCCCGATGATGCGAAGGGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGCGGGCTTTTTTGGGCAAATAGGGGTACTTTGAGGGATCTTTCTAGGAGAAACCATGAACAGTCTCATGCTCCTCCTGAGCAGGTAGGAGAGGGTAATGACTTGAACTGTCGGACTGCAACCCCTTCACATCACGATCCCCGGACTGCAACCCCTACACATCACGACCCCGTTGATGATAAAACAGCTTTGGTGGTATCTGATTGTTGA 870 0.4874 MYSSMNIPDQIEDNDGENHIHYDSHTLDDGGGGGGGVEDVSTDNAYGSGGVGHELSIPPCDDSSQLTLSFRGQVYVFDSVTPEKVQAVLLLLGGCELSSGSQGLEISPTNQRGSAEFPAKCSLPQRAASLIRFRQKRKERCFDKKVRYGVRQEVALRMQRNKGQFTSAKKQDGTNSWGADQDSVQDLVQSETSCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSRRNHEQSHAPPEQVGEGNDLNCRTATPSHHDPRTATPTHHDPVDDKTALVVSDC* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4263 289 MobiDBLite consensus disorder prediction 1 47 - -
Lja1g4263 289 MobiDBLite consensus disorder prediction 235 289 - -
Lja1g4263 289 SMART tify_2 59 94 IPR010399 -
Lja1g4263 289 MobiDBLite consensus disorder prediction 268 283 - -
Lja1g4263 289 Pfam GATA zinc finger 194 230 IPR000679 GO:0006355|GO:0043565
Lja1g4263 289 MobiDBLite consensus disorder prediction 12 26 - -
Lja1g4263 289 SMART GATA_3 188 241 IPR000679 GO:0006355|GO:0043565
Lja1g4263 289 Pfam tify domain 63 93 IPR010399 -
Lja1g4263 289 Gene3D - 186 244 IPR013088 GO:0006355|GO:0008270
Lja1g4263 289 PANTHER GATA TRANSCRIPTION FACTOR 25 12 261 - -
Lja1g4263 289 ProSiteProfiles Tify domain profile. 59 94 IPR010399 -
Lja1g4263 289 ProSiteProfiles GATA-type zinc finger domain profile. 188 237 IPR000679 GO:0006355|GO:0043565
Lja1g4263 289 ProSiteProfiles CCT domain profile. 126 168 IPR010402 GO:0005515
Lja1g4263 289 Pfam CCT motif 126 168 IPR010402 GO:0005515
Lja1g4263 289 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 191 242 - -
Lja1g4263 289 ProSitePatterns GATA-type zinc finger domain. 194 221 IPR000679 GO:0006355|GO:0043565
Lja1g4263 289 CDD ZnF_GATA 193 244 IPR000679 GO:0006355|GO:0043565
Lja1g4263 289 PANTHER GATA TRANSCRIPTION FACTOR 28 12 261 IPR045280 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4263 Lja-Chr1 54674388 54689239 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4263 9 244 Tify Gene Family AT4G24470 56.790 1.23e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lja1g4263 CCT 1.2e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4263 - - lja:Lj0g3v0164269.1 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4263 1 54674388 54689239 Lja1g4263 1 54674388 54689239 ECH