Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4259 ATGCCTCACAGAACCACATACATTTTCCCGCGTCATTTTCCTGAGGGAGGGTTAGATCACGAGAAGGAGAAGCTTGTCAACTCAATCAGATCACAAACTTTCGGCGTTGAAACCGACCCTTCCAAAAAGCCACTCTCGTCGTCCTCAACCACCGGAAACCACGCCGTCCGCGTCTCCTCCGGCAAGCGCTCCGCCGTCTCCGACCTGTTCGCCACCGGCGATAAGCTCCGGCACAGACACAAGCAGGTTGCAGCCTTCTGCGACTGGTTGACAGACAAAAGAGAAGATCGCGACCTTCTACTTCCACCGCCGGAGAAGGAGACCGCCGTCGACCGGAGATTTGACCGGCAGGTTTCACTTCCGAGGCTATCGAGCGGGAGTAGCAGCTATGCTGGGAGCTTGTTCTCCGGGACGACGCTGGACGGCAATTTCTCCAGCGGCATTAAGGAGGAAACGCCGTCGTCGTCTCGGCTCTCCACCATTAACACTGCAACAGCGAGGAGGCAGAAGGAGGTGGAAGAAAGCGAAGAAGAAACATTGGCGAAGAAGTGTAAAGAGAGCTACATGTTGCAGCGTACATTAGCAAATCGGCTCACATTTTTGGCTAGTCTCGTGACAGAGCCTATTCTCCCTCCTTGCACTGAAACATGGGATGCTGATTCGGTTTCTTATCGTCTATGGGTGAGTGGGTGCTTGTCATACTCAGACAAGATATCTGATGGCTTTTACAACATATTGGGGATGAATCCATATCTGTGGGTGATGTGCAATGATGTCGAGGAAGGTAGACGGATACCGACTTTAATGGCGCTTAAAGTTGTTGAACCCAGTGAGACTTCTATGGAGGTGGTGCTTGTTGATGGACATGAGGACTCTCGGCTGAAGCTGCTTCACGATAAAGCACAAGAGCTGTATTGTGCTTCTGAGAACAGCTTGGTGCTGGTGGAACAGCTAGGAAAACTTGTTGCCATATATATGGGGGGTACGTTCCCGGCGGAGCAAGGAGATCTCCACAAGTGTTGGAAGTTGGTTAGTAAGAAGTTGAGGAGTTTTCAAAAGTGTGTTGTGCTTCCCATTGGCAGCCTATCTGCTGGGCTTTGTAGGCATCGGGCAATTCTTTTCAAGAGGTTGGCAGATTACATAGGTTTGCCGTGTCGCATAGCTCGGGGCTGCAAGTATTGTGCTGCGGATCATAGATCCTCTTGCCTTGTTAAGATTAAAGATGACAAGCATCTCTCAAGGGAATACGTAGTTGACCTGGTTGGGGAACCAGGAAATGTCCATGGGCCAGATTCCTCAATTAATGGAGCATATATTTCTTCAATGCCTTCCCTATTTCAAATTTCTCATTTAAAAGAATTACAATCACCATATATGGATGGTGCAACATGTTCTCAAACTATGAGTTTCAATCACACTTCTGTTAATCCTGAAAGACATCTGAATTCAGGCTTTGGACATAATGATCAACCAGTTAAAGAAACTGATTTGCTGAAAAATCAAAAGGGCCCCAATTACGCTTCAGTTGATCAAAGCTGTGAAGGAACCGTACCACCTCTAGTTCCTTTTTGTTTAAAGGGGAATGAAGAAGAATGTGCAGTTCTAGGTTCAATCTTGCCTACCATTGATGAAGATGTTTCTAAAGCTCCTTGTTTTGCCGGTGAAGCATCATCACATGAAAATCCAAGGCTTACTGAAGATGCAGTTGTAGTACAAGAAATTTCCGACAATGAGATCATAGTAACTGGAAGTTGTGTGGTAAAAAGTACTTTCAAACAATGTATATTGAATTCATCCTGCCAATCAGCACTGGTACAGGTAGACAGCATAATTGGAAATCAGGGCTGTTTATCAGCTGGGAATGTTCCGAGATATGTGAATCTTGAACCATCACTTGCAATGGACTGGCTTGAGATATCGTGGGATGATTTGCGAATTAAAGAGCGTGTTGGTGCTGGCTCATTTGGGACAGTGCACCATGCTGAATGGCATGGATCAGATGTTGCAGTCAAGGTTTTAACTGTTCAAGATTTCCATGATGATCAGCTGAAGGAGTTTCTTAGAGAGGTTGCAATAATGAAACGTGTTCGGCACCCAAATGTGGTGCTCTTCATGGGTGCAGTTACGAAATGTCCCCATCTGTCAATAGTGACAGAGTATTTGCCTAGGGGTAGTTTATATCGTCTGATACATAGGCCGGCATCTGGTGAAATACTGGATCACAGAAGAAGATTACGGATGGCTTTGGATGTGGCTAAAGGGATCAATTATCTCCATTGCCTGAAACCTCCAATTGTGCACTGGGATCTCAAATCTCCAAACTTGCTAGTTGACAAAAATTGGACAGTGAAGGTTTGTGATTTTGGATTGTCCAAATTTAAGGCAAACACTTTCATACCGTCAAAATCTGTTGCTGGAACACCCGAGTGGATGGCTCCAGAATTTCTTCGCGGAGAACCTTCAAATGAGAAATCTGATGTATACAGTTTTGGAGTTATCTTGTGGGAACTCGTGACCATGCAACAACCATGGAGTGGACTTAGCCCTCCACAGGTGATTGGAGCTGTTGCTTTCCAGAATAGGAGGCTTGCTATCCCTTCAAACATTTCCCCAGCTTTGGCCTCCCTCATGGAATCTTGTTGGGCTGATGACCCTGGTCAACGCCCATCTTTTGCTGATATAGTTGAGTCACTAAAGAAGCTGCTGAAGTCCCCAACAGAGATGATAAAAATGGGTACTGATACATAA 2748 0.4596 MPHRTTYIFPRHFPEGGLDHEKEKLVNSIRSQTFGVETDPSKKPLSSSSTTGNHAVRVSSGKRSAVSDLFATGDKLRHRHKQVAAFCDWLTDKREDRDLLLPPPEKETAVDRRFDRQVSLPRLSSGSSSYAGSLFSGTTLDGNFSSGIKEETPSSSRLSTINTATARRQKEVEESEEETLAKKCKESYMLQRTLANRLTFLASLVTEPILPPCTETWDADSVSYRLWVSGCLSYSDKISDGFYNILGMNPYLWVMCNDVEEGRRIPTLMALKVVEPSETSMEVVLVDGHEDSRLKLLHDKAQELYCASENSLVLVEQLGKLVAIYMGGTFPAEQGDLHKCWKLVSKKLRSFQKCVVLPIGSLSAGLCRHRAILFKRLADYIGLPCRIARGCKYCAADHRSSCLVKIKDDKHLSREYVVDLVGEPGNVHGPDSSINGAYISSMPSLFQISHLKELQSPYMDGATCSQTMSFNHTSVNPERHLNSGFGHNDQPVKETDLLKNQKGPNYASVDQSCEGTVPPLVPFCLKGNEEECAVLGSILPTIDEDVSKAPCFAGEASSHENPRLTEDAVVVQEISDNEIIVTGSCVVKSTFKQCILNSSCQSALVQVDSIIGNQGCLSAGNVPRYVNLEPSLAMDWLEISWDDLRIKERVGAGSFGTVHHAEWHGSDVAVKVLTVQDFHDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKCPHLSIVTEYLPRGSLYRLIHRPASGEILDHRRRLRMALDVAKGINYLHCLKPPIVHWDLKSPNLLVDKNWTVKVCDFGLSKFKANTFIPSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWSGLSPPQVIGAVAFQNRRLAIPSNISPALASLMESCWADDPGQRPSFADIVESLKKLLKSPTEMIKMGTDT* 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4259 915 PRINTS Tyrosine kinase catalytic domain signature 869 891 IPR001245 GO:0004672|GO:0006468
Lja1g4259 915 PRINTS Tyrosine kinase catalytic domain signature 825 847 IPR001245 GO:0004672|GO:0006468
Lja1g4259 915 PRINTS Tyrosine kinase catalytic domain signature 759 777 IPR001245 GO:0004672|GO:0006468
Lja1g4259 915 PRINTS Tyrosine kinase catalytic domain signature 718 731 IPR001245 GO:0004672|GO:0006468
Lja1g4259 915 Pfam Ethylene-responsive protein kinase Le-CTR1 219 427 - -
Lja1g4259 915 Gene3D Phosphorylase Kinase; domain 1 637 721 - -
Lja1g4259 915 MobiDBLite consensus disorder prediction 32 59 - -
Lja1g4259 915 ProSiteProfiles Protein kinase domain profile. 644 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4259 915 Gene3D Transferase(Phosphotransferase) domain 1 723 911 - -
Lja1g4259 915 SMART serkin_6 644 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g4259 915 Pfam Protein tyrosine and serine/threonine kinase 644 898 IPR001245 GO:0004672|GO:0006468
Lja1g4259 915 CDD STKc_MAP3K-like 650 898 - -
Lja1g4259 915 ProSitePatterns Serine/Threonine protein kinases active-site signature. 765 777 IPR008271 GO:0004672|GO:0006468
Lja1g4259 915 ProSitePatterns Protein kinases ATP-binding region signature. 650 671 IPR017441 GO:0005524
Lja1g4259 915 PANTHER SERINE/THREONINE-PROTEIN KINASE CTR1-LIKE ISOFORM X1 91 913 - -
Lja1g4259 915 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 91 913 - -
Lja1g4259 915 SUPERFAMILY Protein kinase-like (PK-like) 622 898 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4259 Lja-Chr1 54604434 54612211 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4259 1 914 MAP Kinase Kinase Kinase AT4G24480 54.944 0.0 1028
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Lja1g4259 PK_Tyr_Ser-Thr 1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4259 - - gmx:100808435 1406.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4259 1 54604434 54612211 Lja1g4259 1 54604434 54612211 ECH