LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g4252	ATGCCGACTTCAGGCACAAAGTGCAACAAGCTCTCTTTCTCTGAGGAAGACGCTGCAACTCTCACAGAGAGGTACGATACAACTACTGTGTTAACATTGCTCCAAGAGATAGCAAATTATCCTCATACGAAGATTGATTGGAATGAGTTGGTGAAGAAAACCTCCACTGGTATTTCTAATGCCAGGGAATATCAGATGCTCTGGCGTCACTTGGCGTATCGCGATGCCTTGCCTGAAAAGTTTGAAGATGGAGCTCAGCCTCTGGATGATGATAGTGACCTAGACTGTGAGCTGGAAGCGTTACCCCCAGTAAGTGAAGAATCTGCATTGGAGGCTGCAGCATGTGTGAAGGTAATGGTTGCTTCCTGTACGTTTAGTGAATCTACCCCTACTAGCTCAACAATTGAGGCTCCATTGACTATACATGTTCCAGTTTGCCATTCATCTCGAACTCCTAATGAAACCTCACAGCCCTCTAATTTAATGGAAAGGACAACCATGACCTTTCCAGTTACTGTTCCGAGACAGACACTGCCAACTATATCATCAACAGATGGTATAGAAACCAAGGGTAATATTGGTGGTAACTTGGCTTCCAAAAGAAAAAGAAAACAATGGTCAGAGGAAGAGGACATGCAGCTACGAGCTGCTGTTCAGAGATTTGGTGAAGGGAATTGGGCAACCATGGCAAAAGGAGACAATTTCCCTATTAAGAGAAGTGCAACACAGTTGGCTCAGAGGTGGAGCACTTTACGTAAGAAAGACTGCAGTGCCAACTCAGGAACCAATTTGCCCAACCCACAGTATACTACTGCTGAACAACTGGCAACTCGGCACTCTTTATCTTTAGCCCTTGATATGCCATTCAAAAAGTTAACTACTCCTGGAATTTCTGCTCCTGTTAGGACATCCGCATCAATTAAAAATCAAGTTCAGCCTTGTACTTCTAAGGTGGTTTCCACAGTTCAGAGTAGTTCTGTACCACCTCAGCATCCATCTCAACAAGTTTTGTTGGGATCCGCAAAATCTAAATTAAAATCAGAAAATCCAGTCTCAAAGTGTAATCCAGTTTCAGATCCTGTGTTAAAATCTACCACAATTCATTCTGGTGCAAAGGTAACATCAGAAAATCCAGTCTCAAAGTGTAATCCAGTTTCAGATCCTGTGTTAAAATCTACCACAATTCATTCTGGTGCAAAGGTTGTTCCACGATCTATTGCTGTATCACAATTTAAGGGTGTTCAAGTAAGAAACATGGTAGGTAGTGTGCCTGCAGGTAGCTGTCTGACAAAGACACCCATTTCTGCTGGTTTGCCTTCTGACATAAAGGATAAACATGTTTCTTCCGGGGTTGGTGGAGCTTTGCCAAAGCAAGAAGTTAATCCGACTAAAGATTGTAGAGTTTCTAATGTTGGTTCCATTCCAAAAGAGAAGGCAAGAGAAGTCGGCACTCCTGTGGTCACTGCTCGGTGTCAAGTTGATGGCAATCCGGATAAGGGGCGAGTAGATGTAGTTAAACCCAAGAGCATGCCTCCTATAAAAGTTGCAGGTGAAAAAATTTCACAACCTAAAGCAGTCCCACAAAATACAGGAGGGTGTGTAGAGCAGGGAAGTGTTAAGAATTCAAACTTCACCCCCAAGACAGAGACTACTGAGAATGAGAATGGCAAACTGCATAAAGAAGGTCAAGATTCAGAACAAGATAAGAGGAAAAATTCAATTAGTGGAAGTTCTGATAATCAAAACACAAATGTGAAGCATGTAAATCTGCCAACACAAGATCAATGCAAGCAAAATTTGGAACCTCCCAAGATAGTTAAAAGTGAAAACTGA	1833	0.4244	MPTSGTKCNKLSFSEEDAATLTERYDTTTVLTLLQEIANYPHTKIDWNELVKKTSTGISNAREYQMLWRHLAYRDALPEKFEDGAQPLDDDSDLDCELEALPPVSEESALEAAACVKVMVASCTFSESTPTSSTIEAPLTIHVPVCHSSRTPNETSQPSNLMERTTMTFPVTVPRQTLPTISSTDGIETKGNIGGNLASKRKRKQWSEEEDMQLRAAVQRFGEGNWATMAKGDNFPIKRSATQLAQRWSTLRKKDCSANSGTNLPNPQYTTAEQLATRHSLSLALDMPFKKLTTPGISAPVRTSASIKNQVQPCTSKVVSTVQSSSVPPQHPSQQVLLGSAKSKLKSENPVSKCNPVSDPVLKSTTIHSGAKVTSENPVSKCNPVSDPVLKSTTIHSGAKVVPRSIAVSQFKGVQVRNMVGSVPAGSCLTKTPISAGLPSDIKDKHVSSGVGGALPKQEVNPTKDCRVSNVGSIPKEKAREVGTPVVTARCQVDGNPDKGRVDVVKPKSMPPIKVAGEKISQPKAVPQNTGGCVEQGSVKNSNFTPKTETTENENGKLHKEGQDSEQDKRKNSISGSSDNQNTNVKHVNLPTQDQCKQNLEPPKIVKSEN*	611

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g4252	610	PANTHER	HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN	454	603	-	-
	Lja1g4252	610	SUPERFAMILY	Homeodomain-like	201	255	IPR009057	-
	Lja1g4252	610	CDD	SANT_TRF	204	253	-	-
	Lja1g4252	610	MobiDBLite	consensus disorder prediction	574	599	-	-
	Lja1g4252	610	SMART	sant	202	254	IPR001005	-
	Lja1g4252	610	MobiDBLite	consensus disorder prediction	552	573	-	-
	Lja1g4252	610	PANTHER	HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN	6	374	-	-
	Lja1g4252	610	ProSiteProfiles	Myb-like domain profile.	198	252	IPR001005	-
	Lja1g4252	610	PANTHER	HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN	372	443	-	-
	Lja1g4252	610	PANTHER	HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN	454	603	-	-
	Lja1g4252	610	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	198	256	IPR017930	-
	Lja1g4252	610	PANTHER	HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN	372	443	-	-
	Lja1g4252	610	PANTHER	HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN	6	374	-	-
	Lja1g4252	610	Gene3D	-	197	260	-	-
	Lja1g4252	610	MobiDBLite	consensus disorder prediction	523	551	-	-
	Lja1g4252	610	Pfam	Myb-like DNA-binding domain	203	251	IPR001005	-
	Lja1g4252	610	MobiDBLite	consensus disorder prediction	515	610	-	-
	Lja1g4252	610	MobiDBLite	consensus disorder prediction	177	208	-	-

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Lja1g4252		Myb_DNA-binding	7.3e-09	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g4252	-		-	gmx:100805773	625.55

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja1g4252	1	54535841	54543127	Lja1g4252	1	54535841	54543127	ECH